AMCG00021390 (siah2l,siah2,LOC102786130,LOC101471392)


Basic Information

Item Value
gene id AMCG00021390
gene name siah2l,siah2,LOC102786130,LOC101471392
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16183823 ~ 16184805 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021390
ATGAGCCGTCCGTCCTCAGCGGGCGGAGCGGGCGGAGGACTCGGAGCTGGGAAAGCGGGCGGCGGAAAGCACGGAGGCTCGGTCGGggctgccgccgccgccgctgccgCTGCCGCCGCGGCCGCAgcagccgccgccgccgccgccgccgccgccggaGTGTCTGGGTCGGCGGCCGTCTCTGGCTCGGCCACCCCCGTCGCTGCTGCCGCCCTGCCCGCCGCTGCCCTCCCGGCCCAAGCGGCGGAGTTGACAGCTCTGTTCGAGTGCCCGGTGTGTTTCGACTACGTGCTGCCGCCGATCTTGCAGTGCCAGGCCGGCCATTTGGTCTGCAACCAGTGCCGGCAGAAGCTGAGCTGCTGTCCGACCTGTCGCGGCCCTCTGACGCCCAGCATCAGGAACTTAGCCATGGAGAAAGTGGCCTCGACACTTCCCTTTCCCTGCAAGGGCTCGGAGGCGTGTTGTGATGAAGGGAATCGATATTATTGGCAGGTCGGCAATCTGCAGAAAGCTGGAGGCTTTGCGATTGACCAGTACAGTACTGCATAG

Function

symbol description
siah2l Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of circadian rhythm. Predicted to act upstream of or within rhythmic process. Predicted to be active in cytoplasm. Is expressed in dorsal aorta; gut; male organism; nervous system; and otic vesicle. Orthologous to human SIAH2 (siah E3 ubiquitin protein ligase 2).
siah2 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in negative regulation of apoptotic process; regulation of circadian rhythm; and ubiquitin-dependent protein catabolic process. Acts upstream of or within cellular protein catabolic process and negative regulation of canonical Wnt signaling pathway. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Siah2-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021390 True 549 mRNA 0.68 2 16183823 16184805

Neighbor

gene id symbol gene type direction distance location
AMCG00021380 NA coding upstream 2001 16176362 ~ 16181822 (+)
AMCG00021378 LOC108434851,LOC107742289 coding upstream 17663 16138851 ~ 16166160 (+)
AMCG00021377 rab38c,LOC103035037,LOC108427929,LOC107733499,LOC107673818,LOC108278910,LOC107579578 coding upstream 52565 16125521 ~ 16131258 (+)
AMCG00021379 vbp1,LOC107588140,LOC107668907,LOC102781525,LOC107562614 coding upstream 70403 16111308 ~ 16113420 (+)
AMCG00021381 NA coding upstream 72964 16110416 ~ 16110859 (+)
AMCG00021391 siah2,LOC108431284,LOC107732330,LOC107692789,LOC107697363,LOC105023934,LOC107587204 coding downstream 15140 16199945 ~ 16202371 (+)
AMCG00021385 slc25a14,LOC106567890,LOC107697362 coding downstream 38099 16222904 ~ 16232810 (+)
AMCG00021386 NA coding downstream 71660 16256465 ~ 16270872 (+)
AMCG00021389 NA coding downstream 103949 16288754 ~ 16289608 (+)
AMCG00021395 LOC103355350,LOC107387146 coding downstream 233418 16418223 ~ 16434076 (+)
G85623 NA non-coding upstream 13937 16140523 ~ 16169886 (+)
G85552 NA non-coding upstream 261102 15920739 ~ 15922721 (+)
G85507 NA non-coding upstream 428391 15753082 ~ 15755432 (+)
G85497 NA non-coding upstream 607305 15575549 ~ 15576518 (+)
G85455 NA non-coding upstream 620906 15561745 ~ 15562917 (+)
G85674 NA non-coding downstream 104944 16289749 ~ 16292193 (+)
G85746 NA non-coding downstream 362852 16547657 ~ 16549345 (+)
G85757 NA non-coding downstream 384642 16569447 ~ 16569650 (+)
G85758 NA non-coding downstream 387388 16572193 ~ 16572868 (+)
G85760 NA non-coding downstream 399512 16584317 ~ 16584765 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 110202 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 751459 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2110698 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2150266 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2746415 13435307 ~ 13437408 (+)
G85764 LOC103366846,LOC106930986 other downstream 405376 16590181 ~ 16592973 (+)
G85787 NA other downstream 471839 16656644 ~ 16714038 (+)
G85869 NA other downstream 813072 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1285520 17470325 ~ 17473396 (+)
G86121 NA other downstream 2063685 18248490 ~ 18249686 (+)

Expression


Co-expression Network