AMCG00021740


Basic Information

Item Value
gene id AMCG00021740
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27397569 ~ 27405275 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021740
CTTCCAGAACAGTATTACAGCTTGACGTGGTTCCTCAGCCCAATCCTGGGATTGATCTTCACCCCTCTGATTGGATCAGCCAGTGACCGCTGCACCTTGAGATGGGGCCGCCGGCGGCCATTCATCCTGGCTCTTTGCGTGGGTGTCCTGATGGGGGTGGCGCTCTTCCTCAATGGATCACTCATAGGTCTGGCCATTGGCGATGTTCCCGGCACCCAGCCCATTGGGATCGTTTTGACTGTCCTGGGGGTGGTGGTGCTGGATTTCTGTGCAGACGCTACTGAAGGGCCAATCCGTGCCTACCTGCTGGATGTGGCAGACACAGAGGAACAAGACATGGCACTCAACATCCATGCTTTTTCTGCTGGGTTGGGAGGAGCGGTGGGCTATATGCTGGGTGGTCTCGACTGGACTCATACCTTCCTGGGCCTTGCCTTCAAGTCTCAGGAGCAGGTCCTGTTCTTCTTTGCTGCCATCTTGTTCACCATCTCTGTGGGGCTGCATCTGTGCAGCATCGAAGAGCAGCAGTACAGCCCCCAGCAGGACCGTGTGGACGAGGAGGCGGATGCCACGTCGTCGGTGAAGCTCAACGGCAGCCTTGCAGTCCCTGCCCTCCCTAGGCTGGATCTGATTGGCGAAGAGGAGCCCTACTGCCTTTACGACGAGGCCCGCTCTGAGAACGACCTCGACATGGACTTCCTGGACCTGGAGATTGTGCGGAGCAAGAGCGACTCGGTGCTGCACATGACGGATGCCACCCTGGAGATGGACGGCGAGGCCCTGTTCCTGCGGGACATCGAGCCCTCCATCTTCCAGGACCAGCTGTCCTCCTATCACAGCACCCCCCCACGGCGCAGCAGCAGTGTGGGCAGCCAGGAGCTCCTCCGGGCCAAGTTCACCCGCCTGTCTGGCTTCCTTAATGAGAacgagagagacggggaggagATGCTGCTGAACAACCAGCTCAACGAAGCCAAAGCGCCAAACGGAGACACTGCGGGCTCCAGCAGCAATGGCATCAACGGGCACGCGAACATTGGCATGAAGCAGTCCAACACCACGGCCTCCATGCGCCGGCGCCGGCACACGTTCTACCGCCAGCCATCCTGCACCTTCTCGTACTATGGGCGCGTTGGCACCCACCGCTACCGTTACCGGCGGGCCAACGCCGTGGTGCTCATAAAGTCCTCGCGCAGCATGAACGACATCTACGAGATGCAGAAGCGCCAGAAGAGGCAGAGGCAGCGCCAACGGCACCAGAGCGGCAACACCAACTCCAGTGGGGACACGGAGAGCgaggagggggagacggagacCACCGTGCGCTTGCTCTGGCTCTCCATGCTCAAGATGCCCCCAGAGCTGCtccggctgtgtgtgtgtcacctgCTCACCTGGTTCTCCATCATTGCAGAGGCCGTCTTCTACACAGACTTCATGGGCCAGGTCATCTATGAGGGGGACCCCAAGGCTGCTGCTAATTCTACTGACCTTCAGAGCTACCATAAAGGAGTCCAGATGGGATGCTGGGGGTTGGTCATCTATGCTGCTACTGCTGCCATATGCTCAGCTGTTCTCCAAAAGTACCTGGACAACTATGACCTCAGCATCAAGATCATCTACATCCTGGGCACACTGGCCTTCTCCATTGGCACGGCAGTGATGGCCATCTTTCCCAACGTGTACGTGTCTATGACAATGATCAGCAGCATGGGCATCATCTCCATGAGCATCTCCTACTGCCCCTACGCCCTGCTCGGCCAGTACCACGAGATGAAAGAGTATATCCACCACAGCCCTGGCAACTCCAAGCGAGGCTTTGGCATCGACTGCGCCATCCTCTCCTGCCAGGTGTACATCTCCCAGATCCTGGTGGCCTCGGCCCTCGGGGGAGTCGTGGACGCAGTGGACAGTGTCCGGGTCATCCCGATGGTGGCCTCGGGGGGCTCGTTCCTGGGTTTCCTCACCGCCACCTTTCTGGTCATCTACCCCAACAACTCTTCAGAGGAGGCCAAGGAGGAGCAGGCTAAGGCCCTGGCTCCGAAAGAAGGGGGCGGCGGGGACGCGGCAGAGAAGCCCAGTGTGCTCAAGCTGACGCGCAAGGGCCCCGCCACGACCTGCAAGGTGGAGTGCGAGTCCACGCTG

Function

GO: NA

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021740 True 2145 mRNA 0.60 6 27397569 27405275

Neighbor

gene id symbol gene type direction distance location
AMCG00021739 NA coding upstream 64878 27331615 ~ 27332691 (+)
AMCG00021737 NA coding upstream 81576 27295089 ~ 27315993 (+)
AMCG00021734 NA coding upstream 110249 27261839 ~ 27287320 (+)
AMCG00021733 scrt1,scrt1b,LOC105018847,LOC105904905,LOC107741724,LOC105910659,LOC107587804 coding upstream 274346 27121331 ~ 27123223 (+)
AMCG00021727 NA coding upstream 343503 27026147 ~ 27054066 (+)
AMCG00021741 LOC108429086 coding downstream 107169 27512444 ~ 27526967 (+)
AMCG00021742 NA coding downstream 146810 27552085 ~ 27583265 (+)
AMCG00021746 ago2,LOC107591597 coding downstream 207486 27612761 ~ 27620292 (+)
AMCG00021748 trappc9,si:dkey-218f9.10,LOC107681624 coding downstream 238009 27643284 ~ 27680343 (+)
AMCG00021749 LOC106570238,LOC102307979,LOC102294850 coding downstream 322518 27727793 ~ 27773527 (+)
G88045 NA non-coding upstream 201699 27195652 ~ 27195870 (+)
G88043 NA non-coding upstream 258126 27138827 ~ 27139443 (+)
G88027 NA non-coding upstream 333618 27063563 ~ 27063951 (+)
G88026 NA non-coding upstream 335479 27061819 ~ 27062090 (+)
G88025 NA non-coding upstream 337180 27060182 ~ 27060389 (+)
G88076 NA non-coding downstream 3584 27408859 ~ 27409687 (+)
G88145 NA non-coding downstream 187355 27592630 ~ 27594570 (+)
G88151 NA non-coding downstream 215081 27620356 ~ 27621880 (+)
G88150 NA non-coding downstream 221777 27627052 ~ 27631654 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding downstream 483283 27888558 ~ 27982127 (+)
AMCG00021707 NA other upstream 828421 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1200493 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1527374 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1644316 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 2025230 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 227640 27632915 ~ 27637084 (+)
G88238 NA other downstream 1373040 28778315 ~ 28778733 (+)
G88276 NA other downstream 1655612 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1859552 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 1973300 29378575 ~ 29385325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_01375075_01396650 SLC45A4 coding CI01000319 null 1375075 ~ 1396650 (+)