G88076


Basic Information

Item Value
gene id G88076
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27408859 ~ 27409687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109938
CAATTGAGACATGTTCTCACCAGGTGAGGACTGAGACGTGCCGGAATGGCCTTCTGGCCTAATGTCACCTCTACAGTTCTTCATTGTTCCTTTGTTTCTGCATTTATCCTTTGCTTACCGTTCAGAGATTATCTTCACAGTTAGAAGTGACTTTTTGCCTTTGGTTGTCTTTTTGAAGTTGTAAATATTTCttttcaaatagttttcttttgcTGCTATTGAGGGAAGCtgattgttatttttgatttttactactgtatatattaataaagtcTATGTAAATTTGCTGAAGCCTTTTCATGTAGGACGATGAGAGAACACTGTATACAAAGCACCTTTTAACCTTTGTTAATTAaccaaaatgctttaaaagttagtttatttttttggttttgttcttacATGGTGACTTTTCACACATGCCTGTGCAAGCTGCActtgttgctttaaaaatgcCCAGTATTGTTGCATTACttcaattgtttaaatttaattgcaattaattaaaatggttaTTTTTGAAAAGGATGCAATGATCTCCTTGAAATAATCTCCTTGGCCTGGTCTgcacaatttaatgtattcGATGTACAGTGGTAGAGAGAGATATTTAACAAGGTCAGGGATAATTCTTCCAGGCTGTGCatgtttcagaaatgtaaaacataatattcATGTAAATAACAGGTagccatatttaaaaatgtatacataacgCTTTCCTTTCGCCTTCTGAGAAAATGGTAGAAAATCgaatttaattttactgttgAGAAGAggaattgattatttttattcccaAGGATGTGAAgccacactttcaatgtgc

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU109938 True 829 lncRNA 0.34 1 27408859 27409687

Neighbor

gene id symbol gene type direction distance location
AMCG00021740 NA coding upstream 3584 27397569 ~ 27405275 (+)
AMCG00021739 NA coding upstream 76168 27331615 ~ 27332691 (+)
AMCG00021737 NA coding upstream 92866 27295089 ~ 27315993 (+)
AMCG00021734 NA coding upstream 121539 27261839 ~ 27287320 (+)
AMCG00021733 scrt1,scrt1b,LOC105018847,LOC105904905,LOC107741724,LOC105910659,LOC107587804 coding upstream 285636 27121331 ~ 27123223 (+)
AMCG00021741 LOC108429086 coding downstream 102757 27512444 ~ 27526967 (+)
AMCG00021742 NA coding downstream 142398 27552085 ~ 27583265 (+)
AMCG00021746 ago2,LOC107591597 coding downstream 203074 27612761 ~ 27620292 (+)
AMCG00021748 trappc9,si:dkey-218f9.10,LOC107681624 coding downstream 233597 27643284 ~ 27680343 (+)
AMCG00021749 LOC106570238,LOC102307979,LOC102294850 coding downstream 318106 27727793 ~ 27773527 (+)
G88045 NA non-coding upstream 212989 27195652 ~ 27195870 (+)
G88043 NA non-coding upstream 269416 27138827 ~ 27139443 (+)
G88027 NA non-coding upstream 344908 27063563 ~ 27063951 (+)
G88026 NA non-coding upstream 346769 27061819 ~ 27062090 (+)
G88025 NA non-coding upstream 348470 27060182 ~ 27060389 (+)
G88145 NA non-coding downstream 182943 27592630 ~ 27594570 (+)
G88151 NA non-coding downstream 210669 27620356 ~ 27621880 (+)
G88150 NA non-coding downstream 217365 27627052 ~ 27631654 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding downstream 478871 27888558 ~ 27982127 (+)
G88225 NA non-coding downstream 1288191 28697878 ~ 28698085 (+)
AMCG00021707 NA other upstream 839711 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1211783 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1538664 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1655606 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 2036520 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 223228 27632915 ~ 27637084 (+)
G88238 NA other downstream 1368628 28778315 ~ 28778733 (+)
G88276 NA other downstream 1651200 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1855140 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 1968888 29378575 ~ 29385325 (+)

Expression


Co-expression Network