CI01000000_05204803_05264985 (LDB2, LDB2A)


Basic Information

Item Value
gene id CI01000000_05204803_05264985
gene name LDB2, LDB2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 5204803 ~ 5264985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_05204803_05264985.mRNA
ATGAGAGCCCAGCCCTCCTCCCCATGCTCTCCTCTCCCGCCTCCTCCGCGCGCTCTCATCTCTCCGCTCCGCGTGCAGCCAGTGACTGCTGCTGTCTCGCGGCGTTTGGAGATCCTGCACGCGCGCTGTATGGATGCTGAATATTTGGCGCTGCTGTAAACGCCGCACGGAATCAACATGTCCAACCCTCCGCACGACCCGTTCTACTCGTCCCCTTTCGGACCGTTCTATCGGAGACATTCACCGTACATGGTTCAGCCTGAATACAGAATCTATGAGATGAACAAACGACTCCAGTCCCGGACAGAGGAGAGTGATAGTCTGTGGTGGGATGCGTTTGCTACAGAGTTCTTTGAAGAGGATGCTACATTGACCCTCTCCTTCTGCTTGGAGGATGGACCAAAAAGATACACAATCGGGCGGACCCTCATCCCTCGTTACTTCAGCACGGTATTTGAGGGTGGCGTGTCAGACCTCTACTACATCCTGAAACACTCCAAAGAGTCCTTCCACAACTCCTGCATCACTGTAGACTGCGATCAGTGCACCATGGTCACACAGCACGGCAAGCCCATGTTCACCAAGGTGTGTACGGAAGGCAGGTTGATTCTGGAGTTCGCCTTTGATGATTTGATGAGGATCAAGACGTGGCACTTCAACATCAGACAGTATCGGGAACTTATCCCACGGAGCATTCTCGCCATGCACGCACAAGACCCTCAAGTCCTGGAGCAGCTCTCGAAAAACATCACCCGCATGGGATTGACCAACTTCACCCTCAACTACCTCAGGTTGTGTGTCATTCTGGAGCCGATGCAAGAGTTAATGTCTCGACACAAGACCTACAACCTCAGCCCGAGAGACTGTCTAAAGACCTGTCTGTTTCAGAAGTGGCAAAGAATGGTGGCTCCTCCAGCTGGACATCCACAGAACTTCAAAACGGAAATTTTCCCCTCAAATCACAAAAAAGCAGAGCCCACTCGACAGACCACGACCAAGAGAAGAAAGAGGAAGAACTCCGCCAGCAGTGCGTCTAACAGTAGCCTAGGCAACAGCGCTGGCGGCAAGAAACGCAGCCCTGCCAACAACTTCAATCTGACCAGCCAGGATGTGATGGTGGTAGGTGAGCCCACTCTGATGGGCGGGGAGTTTGGCGATGAGGACGAGCGTCTGATCACGCGGCTAGAAAACACACAATACGACGCCACCAACGGTCTGGATGATGACGACGACTTCACAAGCTCGCCGGCGCTCGGCAACAACAGTCCCTGGAACAGCAAGCCGCCCACAGGGCAGGACAGCAAGCCAGAGAGTACGGCCTCACAACCCTCCCAG

Function

symbol description
ldb2a Enables chromatin binding activity. Acts upstream of or within negative regulation of BMP signaling pathway; negative regulation of nodal signaling pathway; and sprouting angiogenesis. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including blood island; nervous system; posterior lateral mesoderm; vasculature; and yolk syncytial layer. Orthologous to human LDB2 (LIM domain binding 2).
ldb2 Predicted to enable LIM domain binding activity. Predicted to be involved in several processes, including regulation of cell migration; regulation of kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial structure maintenance; hair follicle development; and somatic stem cell population maintenance. Located in nucleolus; nucleoplasm; and plasma membrane.

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_05204803_05264985.mRNA True 1335 mRNA 0.54 9 5204803 5264985

Neighbor

gene id symbol gene type direction distance location
CI01000000_05173896_05177992 QDPRA coding upstream 26718 5173896 ~ 5178085 (+)
CI01000000_05030001_05137032 FSTL5 coding upstream 67771 5030001 ~ 5137032 (+)
CI01000000_05008086_05008382 NA coding upstream 196162 5008003 ~ 5008641 (+)
CI01000000_04698746_04717749 RAPGEF2 coding upstream 485895 4698041 ~ 4718908 (+)
CI01000000_04661351_04667059 NA coding upstream 537716 4661351 ~ 4667087 (+)
CI01000000_05267332_05282842 TAPT1 coding downstream 2347 5267332 ~ 5283179 (+)
CI01000000_05321817_05358603 PROM1A coding downstream 56485 5321470 ~ 5358764 (+)
CI01000000_05368831_05369719 NA coding downstream 103795 5368780 ~ 5369719 (+)
CI01000000_05372370_05372969 NA coding downstream 107218 5372203 ~ 5373195 (+)
CI01000000_05392450_05401810 BBS7 coding downstream 127465 5392450 ~ 5401867 (+)
G3225 NA non-coding upstream 6632 5197968 ~ 5198171 (+)
G3218 NA non-coding upstream 51749 5152736 ~ 5153054 (+)
G3214 NA non-coding upstream 57569 5146744 ~ 5147234 (+)
G3205 NA non-coding upstream 95201 5091263 ~ 5109602 (+)
G3135 NA non-coding upstream 224677 4979916 ~ 4980126 (+)
G3259 NA non-coding downstream 164395 5429380 ~ 5429687 (+)
CI01000000_05463229_05463809 NA non-coding downstream 166773 5463229 ~ 5465122 (+)
G3200 NA non-coding downstream 174791 5439776 ~ 5478407 (+)
G3168 NA non-coding downstream 237364 5502349 ~ 5503505 (+)
G3188 NA non-coding downstream 264152 5529137 ~ 5531408 (+)
G2850 NA other upstream 478321 4725986 ~ 4726482 (+)
G2774 NA other upstream 750571 4453778 ~ 4454232 (+)
G579 NA other upstream 3295995 1767917 ~ 1908808 (+)
G435 NA other upstream 3771949 1425121 ~ 1432854 (+)
G350 NA other upstream 4527866 671842 ~ 676937 (+)
G6811 NA other downstream 4939846 10204831 ~ 10321679 (+)
G6820 NA other downstream 5162238 10427223 ~ 10433018 (+)
G7018 NA other downstream 5713504 10978489 ~ 10980872 (+)
G7153 NA other downstream 5979472 11244457 ~ 11245633 (+)
G7514 NA other downstream 6871537 12136522 ~ 12137008 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008138 ldb2a coding NC_007125.7 CM002898.2 46678711 ~ 46832825 (-)