G3205


Basic Information

Item Value
gene id G3205
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 5091263 ~ 5109602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU3566
TGAAAAGATATAATAAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCCGTGAGATACTGTATGTATATATATATATAGGGCTTGACATTAACTTTTTTGCTCACCAGCCACTGTGGCTAGTGGTTTTCCAAAGTTACTAGCCACTCAGCATTTTCACTGGCCACAATTTTGCTGTTGGGAAATTACATTTTATGTGATTAAAGTTGACTTTGGCATGCTTAAATTACTTGATTTTGAGTCATTTTACTTGATTTAGAAGATTTAAAACCCTTTCAAACTTTCAAATGCAGATTGACCACCCAAATCAAGACTACATTGTATATCAGGTCGTATGTACAGGTGGGCAAGTGGTGGGCAATATGAGCATAGGCTAATATGAGAAAATTTATGTTATTTTTGTTAGGCTATATAAAAGAACAAAGAGGCAAATTACAAAAACAATAGTAAATTTAAAAAAACTTAAGCCATAACCGACTGTATTCACTTGAGATACTCCACACGATGGACATTTTGACATCTGTGTGCGCGTATATTTGACTATTCAGGCGCAAGGAGAATTGATCGCGCATGTGACAGAGAGAGAG

Function

NR:

description
sushi, nidogen and EGF-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3566 True 588 lncRNA 0.36 2 5091263 5109602

Neighbor

gene id symbol gene type direction distance location
CI01000000_05008086_05008382 NA coding upstream 82622 5008003 ~ 5008641 (+)
CI01000000_04698746_04717749 RAPGEF2 coding upstream 372355 4698041 ~ 4718908 (+)
CI01000000_04661351_04667059 NA coding upstream 424176 4661351 ~ 4667087 (+)
CI01000000_04576065_04586515 ETFDH coding upstream 504382 4576065 ~ 4586881 (+)
CI01000000_04547587_04562715 RXFP1 coding upstream 528426 4547587 ~ 4562837 (+)
CI01000000_05173896_05177992 QDPRA coding downstream 64294 5173896 ~ 5178085 (+)
CI01000000_05204803_05264985 LDB2, LDB2A coding downstream 95201 5204803 ~ 5264985 (+)
CI01000000_05267332_05282842 TAPT1 coding downstream 157730 5267332 ~ 5283179 (+)
CI01000000_05321817_05358603 PROM1A coding downstream 211868 5321470 ~ 5358764 (+)
CI01000000_05368831_05369719 NA coding downstream 259178 5368780 ~ 5369719 (+)
G3135 NA non-coding upstream 111137 4979916 ~ 4980126 (+)
G3130 NA non-coding upstream 117556 4973335 ~ 4973707 (+)
G3125 NA non-coding upstream 123422 4967562 ~ 4967841 (+)
G3124 NA non-coding upstream 123993 4966988 ~ 4967270 (+)
G3115 NA non-coding upstream 129590 4961442 ~ 4961673 (+)
G3214 NA non-coding downstream 37142 5146744 ~ 5147234 (+)
G3218 NA non-coding downstream 43134 5152736 ~ 5153054 (+)
G3225 NA non-coding downstream 88366 5197968 ~ 5198171 (+)
G3259 NA non-coding downstream 319778 5429380 ~ 5429687 (+)
CI01000000_05463229_05463809 NA non-coding downstream 322156 5463229 ~ 5465122 (+)
G2850 NA other upstream 364781 4725986 ~ 4726482 (+)
G2774 NA other upstream 637031 4453778 ~ 4454232 (+)
G579 NA other upstream 3182455 1767917 ~ 1908808 (+)
G435 NA other upstream 3658409 1425121 ~ 1432854 (+)
G350 NA other upstream 4414326 671842 ~ 676937 (+)
G6811 NA other downstream 5095229 10204831 ~ 10321679 (+)
G6820 NA other downstream 5317621 10427223 ~ 10433018 (+)
G7018 NA other downstream 5868887 10978489 ~ 10980872 (+)
G7153 NA other downstream 6134855 11244457 ~ 11245633 (+)
G7514 NA other downstream 7026920 12136522 ~ 12137008 (+)

Expression


Co-expression Network