CI01000000_04698746_04717749 (RAPGEF2)


Basic Information

Item Value
gene id CI01000000_04698746_04717749
gene name RAPGEF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4698041 ~ 4718908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_04698746_04717749.mRNA
CCATAAAAGTGGGACTTGTGTGTCTCTGAGGCATTACAATAGTTTATTTTATTTTATTTATTTTTCCAGGAACAGATTTAAATTAAGTTATTCACTTGAATTGTAATTGATAATCACCTCAAGTGAGCTGTTAACCGCTGTGACCAGATCATTGAGTCAGTGATTTGAAGTTCAGAACCATATCAGTCCAATATGGAAGTTATTTATTCAGAAGTTCATAAAACAAAATCAGATTCAGGGGAAAAAAAAAAAAAAATATATATATATATATATATATAAATGTTCAAGAATACGAGATCACCACTTTTGTATTCTGGTGAATAAAGAAAGTCATACAGGTTTGGAACGGCATGAGGGTGTAATTGATGACAAAATTGTTATTTTTAGGTTATCTGTTCCCACAAGTTGTGTTGACCTTTTTAAGAGGGATGCTATTGGATAGATATAGCCCTTTTTTTTTTTTTTAATATTAGTCCATTTTGCCACCTGTCACCGACATCCTCCCCCACTCCCCTGTCTCCACCCTAAAAAAGAGCCCAGCCTCACATCGCCCCGCCCCATTCGCCCTCTGAGTGGCTGCTTTCAGCACAGTCTGAATATTTGATGAGTAATGCAGGTCATTTAAGTCAAAATGACATGCGTTTGTGTGAGCCCAGATCGAGGGGCTTAAAAAATTAAAAGTGGCTGGAAGACCGAGCTCTAAAGATGCGGCTGGGACCCGGCTTCTGCAAGCAGTTGGTCAAGGCGACATTGTGGGCAGTTACAGGCAGGAATAGAGCATCGCTGGGAATCCTCGGTCAGGCCACCGAGAGTGAGCCCGGCGACATGGACCTCAGCGGCCTGCCCGAAACGGCCGTTGACTCCGAGGAGGATGACGATGAGGAAGATATTGAACGTGCCTCAGATCCCCTCATGAGTCGAGACATCGTCCGAGACTGTCTGGAGAAAGACCCCATGGACCGAACGGATGATGACATAGAGCAACTGTTGGAGTTCATGCACCAGCTTCCGGCCTTTGCCAACATGACCATGTCCGTCAGGAGGGAGCTTTGTGCTGTCATGGTGTTTGCTGTGGTGGAACGGGCCGGCACAATCGTCCTTAATGATGGCGAAGAGCTGGACTCATGGTCTGTGATTCTGAATGGCTCAGTGGAGGTGACGCACCCAGATGGCCGGACGGAAATCCTGTGCATGGGCAACAGCTTTGGTGTGTCCCCCACCATGGAGAAAGAGTACATGAAGGGGGTGATGAAGACCAAGGTGGATGACTGCCAGTTTGTTTGCATAGCACAGCAAGATTACTGCTGTATCCTTAACCAAGTAGAGAAAAATATGCAGAAGGTGGAAGAAGAGGGTGAGATTGTGATGGTGAAGGAACACCGTGAGCTTGACCGCACAGGCACCAGAAAAGGACACATTGTCATCAAGGGCACACCGGAGCGTCTTACCATGCACCTTGTAGAAGAGCACTCAGTGGTCGACCCCACCTACATCGAGGACTTCCTGCTTACCTACCGCACCTTCCTGCCAAGCCCCATGGTGGTGGGCAAGAAACTGTTGGAGTGGTTCCATGACCCCAGCCTCAGGGACAAGGTTACACGGGTAGTCTTGCTGTGGGTGAACAATCACTTCAACGATTTTGAGGGCGACCCCGCAATGACACATTTTCTTGAGGAGTTCGAGTACAATCTGGAGAGAGAGAAAATGTGTGGGCACCTAAGACTGTTAAACATAGCATGTGCTGCCAAAGCTAAACTGCGGGTGGTGACCCTGACAAAACCCTCGAGGGAAGCCCCCCTGGCCTTCACCCTGCTGGGGGGTTCAGAGAAGGGCTTTCGCATTTTCATTGACAGCGTGGAGCCAGGCAGCAAAGCTGCAGAGGCCGGCCTTAAAAGAGGAGATCAGGTAATGTCACACCAGCACTATGCAGGATCTGAAATACTAGAGGTAAATGGGCAAAACTTTGAAAATGTGCCGCTATCCAAAGCCAACGAGATTCTCAAAAACAACACGCACCTGTCCATTACTGTGAAAACCAATCTCTTAGTGTTTAAGGAGCTACTGGCCAGACCTGAACAGGACCAGGAGCAAGAACAGGAGGAGGAGCCAGACAGGAAAAACGGGGCACCTCACATCCCTAAAATCGGGGACATTAAGAAAGCCAGTCGTTACTCCATCCCTGACCTGGCTGTGGATGTTGAGCAGGTCATGGGTCTTGAGAAAGCTAGTAAGAAAGCCAAGGCCAACACCGTAGGTGGCAGAAACAAGCTGAAGAAGATCTTCGACAAGACACTGACCAGTATTCTTCCACCCAAACCTTACAATGATGTTGGGGTGGGACAGTCCCAGGATGACAGCATTGTAGGGCTAAAGCAGTCAAAGCAGATCCCTCCTGCTCTTCCTGTCAGTGGAAACCTTTCATCAAGCAACCCTGACCTGCTGCAGTCACACCATCGCATACTCGACTTCAACAACCAACCTGACATGTCAGACCAGGTATTGCGAGTGTTCAAGGCAGACCAGCAAAGTCGGTACATCATGATTGGGAAGGACACCACAGCAAAAGAAGTCGTAGCTCAGGCCATCCGAGAGTTTGCCTTGACTGCTGCAGCTGAAGCCTATTCGTTGTGCGAGGTGTCAGTCACTCCTGAGGGCGTTATCAAGCAGCGGCGACTTCCTGAACAACTCTCCAAACTAGCCGACAGGATCCAGCTGAGTGGCAGGTACTACCTGAAAAGCAACATGGAGACAGAGACACTGTGCTCAGATGAAGATGCCCAGGAACTACTACGGGAGAGCCAGATCAGCCTGCTGCAACTCAGCACGGTGGAAGTGGCGACCCAGCTTTCCATGCGCGCCTTCGAGTTGTTCTGTGCCATCGAGCCCACCGAGTACATTGATGACCTGTTTAAGCTGAAAACTCGCCTAACTGGGCCCCCCAGTCTCAAGCTCTTTGAGGAAGCCATCAATCGGGAGACCTTCTGGGTGGCCACAGAAGTGGTGCGTGAGCCCAACCAGCTCAAACGCATGAAGATCATCAAGCACTTCATTAAAATTGCACTGCATTGCCGCGAGTGCAAGAACTTCAACTCCATGTTTGCCATCATCAGTGGTCTGAATTTGGCACCGGTGTCCAGGCTGAGAGGCACATGGGAGAAGTTGCCCAGTAAATATGAGAAGCTGTTTAGTGATCTTCAAGACCTATTTGATCCCTCCAGGAATATGGCAAAGTACCGGAACCTTCTTAACAGCCAGAACCTGCAGCCACCCATAATCCCACTCTTCCCTGTAATCAAGAAGGATCTCACCTTCCTGCATGAAGGGAATGACTCGAAGGTTGACGGTTTGGTGAACTTTGAGAAGCTGCGGATGATTGCTAAAGAAATCAGACATGTAGGCCGGATGGCAGCTGTAAACATGGACCCTGCTCTGATGTTCAGAACCAGGAAGAAGAAATGGAGGAGTTTAGGGTCACTCAGCCAGGGCAGTGCCAATGCGGCCGTCCTGGATGTAACCCAGACAGGCGGGCACAAGAAACGGGTCAGACGGAGTTCCTTTCTCAATGCCAAGAAGCTGTACGAGGATGCACAGATGGCACGCAAGGTCAAACAATACCTGTCCAACCTCACCCTGGAGACAAACGAGGAGAGCCTGCAGACACTCTCAATGCAGTGTGAGCCCTCAATCAACACATTGCCGAAGAGTTCCGGCGACCGGAAGAGACCTGACACATCGCCCGTGGTCGCACGGGCCGCCACCCACCAGCGCCAGCAGCTTCAGAAAGCCAACCAGGCGCTTCAAGTGCCTGCCGTAGCGCTCTACCCATCTCGCAAGAAAGTGCCGGTCAAAGACCTACCACCATTTGGCACAAGCTCACCACAGTCTCTGAAGAAGATATTGTCCCTTTCAGAGGAGGCAGGAGAGAGACACAGGAAACAGACAGAGGACAGTGTGTCCAACTCTTCACAGCTGTCATCTCCTCCCACGTCTCCTCACAGCTCACCTAAGAAAGCCATCGCAGCTATAAGAAGCCATGGTATGAAGGGTTTTTCCTCCTTCTGTAGAAAATCACCAACAGGTTATGGACGAGCTGGTGATTACCTGTCAGACTCTGGCCACAGTGAGATCTCCTCACGCTCCAGTCTGGTGAGCACCTCCTCCCTGGACATGGGACAAGAGGAACGCAGGCAGCGGTATGGAGGAATAGCTGCGGAGGGCCATGGCAGTGGACACCGGCTAGAGCGCAGGGCGACTGCTGACCCTGACCAGTACAGTTTGGGGTCCTACTCATCCATGCAGGACTGCCGGGGTCTGTATGCGGGCGGCACCGTGCTGTCTTCTCCCAGCTCAGAGGAGCTTACCCAGGACCAGGGTGACCGTGTGTCTCTTGACGCTGCTGATTCTGGTCGTGGCAGCTGGACTTCATGTTCCAGCGGCTCCCACGACAACATTCAGACCATGCAACAGGGGCGTAGCTGGGAGGCGTTGGCAGAGGGTGCAGGGCTGTGGGGAAGTAGAGGGAGCTGGGCGTCCGCATCCTCTACGTCTTCGGCGGCATGTTGGGGTGAGGACTCTGAGGGCGACACAGGTACCATCAAACGAAGAGGAGGGAGAGATGTGACCACAGACCCAGAGACCAGCAGCATCACCTCCACTGGTTCAGAAGAGTCCAGACAGCACAGTCGACGCCCCTCGCCCATCACTGCAGGCAACACCAAGGCCGTGATTGAGCTCAGAGGAGGAGAGGTCCACACACAGCAGTTCCCCCCAGGCCATGAGTTACATACACCACCCCAGCAGGAAGGTAAAACATCCCAAACTCCAGTTACTTCCACACTCACACACTCACACACCCCACGCACACGAGTCACGGTCTCTGCATGCCAGGAGGACAGCTCCTTCACCTGCCCACCATCACCAACCACCAAAGCATCTCACACAGTGCATGCGTCGCCACGGAGACAGCCTGCCCCCCGTCGCCGTGGCAACATCCCAGTCATTGCTCCCCGCTCTGCCGTGTGTATTGGCTCTCACCCATCAGTGCTCACAGGAAAATCACTAGATCTGCCATCATAAACGCTTGAACACATGATAGAACCTGAAGTCATGTTTGTGTTGTCAGGTAGCCATGAAATAGTGTTAGTACTTATCAGCACAAAGATCCTGAATTTTCACAGTATTTATTTATTTTTTTTTTTTAAGTATTTCCTGTCCTGTCATGTTTGTCTTTGGTATGGTACGGCCAGAGATATTTTATTTCCTTATTATATTTAATTGTTTGTCTCTGACTTTGTTCCAAACCCAAGTGCGTTTCCTATAGACAGCCAAGATTATGCTGCTTTACATTTTGGCCAAAATCAAAGGCAGTTATACATGTAATCTTTGTAGGCAAGGTAATCCCAGAATGCATGTTCTTCCAAGATGATGTAGTTGAGCAAATCATAGATTATTAAAGGCACAATATGTAAAATTTTTTGGATTAAAATATCCAAAAACCACTAGAACAGTGCTATATATTTTGTTGACTTGTGTACGTACATTATCCCAAATGTTTCCATGGATGTTCAAATCCAGAGAAATAAGCAATTTTTAACCAGGACATGGACATGTCCGACTGTCCGTGCGTTGCCTATCAGTGACGTCACCCCTGCGTTACCCTCGATTTCCCTCGATTTTATTTTGTAGAAACACCAAAGACGATATTCTAAAATTGATCTAGCTTACTGCAGTGTGCAACAAGTGTCTCACAGCATTCTCTCGGCAGCAACATTCATATGTATCTAATATGATAAAACAGCTGTGTTTCCTTGTATGTTTGACTGGAAGAAGCGGAAGCGGCGACTGCGGCATAATAAAAGTTCCTCTGCTTTCGAGGCATGTGTCGCGATCGTCTCTCATTAGCAATCGCTCCAGCGGCCTCGTTCAGCTTCCACAGCACTCGGCCCCGCTCTGCTTCATGCTACAGTACCTTTAATAATCTCATCCATGAACATGATTTCTGCCCGAGTCCCATACCGATTCTTTTCCACCGGCTGTGAGGTGAAGACGACATCTCCCAAGATTCAGCGCTAAAACTTGGCGTCATCAAGCTGCTCCTTTGTTTTGAATAGGCGACCTCTAGTGGCGAAAATTCTACATACTGTGCCTTTAATTTATCATATAGTAAATTTGTGTGTATATTGGAAGTATATCCAGTGTGTATGCCATCTTGGAAGAAAATTTTATAGTTATATAA

Function

symbol description
rapgef2 Enables several functions, including anion binding activity; beta-1 adrenergic receptor binding activity; and protein domain specific binding activity. Involved in several processes, including G protein-coupled receptor signaling pathway; positive regulation of intracellular signal transduction; and response to purine-containing compound. Located in several cellular components, including apical plasma membrane; bicellular tight junction; and cytoplasmic vesicle. Implicated in familial adult myoclonic epilepsy 7.

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K08018 RAPGEF2, PDZGEF1; Rap guanine nucleotide exchange factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_04698746_04717749.mRNA True 6235 mRNA 0.49 23 4698041 4718908

Neighbor

gene id symbol gene type direction distance location
CI01000000_04661351_04667059 NA coding upstream 30954 4661351 ~ 4667087 (+)
CI01000000_04576065_04586515 ETFDH coding upstream 111160 4576065 ~ 4586881 (+)
CI01000000_04547587_04562715 RXFP1 coding upstream 135204 4547587 ~ 4562837 (+)
CI01000000_04462428_04462831 NA coding upstream 234929 4462428 ~ 4463112 (+)
CI01000000_04451252_04452143 NA coding upstream 245030 4451130 ~ 4453011 (+)
CI01000000_05008086_05008382 NA coding downstream 289095 5008003 ~ 5008641 (+)
CI01000000_05030001_05137032 FSTL5 coding downstream 311093 5030001 ~ 5137032 (+)
CI01000000_05173896_05177992 QDPRA coding downstream 454988 5173896 ~ 5178085 (+)
CI01000000_05204803_05264985 LDB2, LDB2A coding downstream 485895 5204803 ~ 5264985 (+)
CI01000000_05267332_05282842 TAPT1 coding downstream 548424 5267332 ~ 5283179 (+)
G2847 NA non-coding upstream 126447 4571357 ~ 4571594 (+)
G2845 NA non-coding upstream 128104 4569731 ~ 4569937 (+)
G2795 NA non-coding upstream 213226 4484583 ~ 4484815 (+)
G2793 NA non-coding upstream 218847 4478985 ~ 4479194 (+)
G2792 NA non-coding upstream 221276 4476557 ~ 4476765 (+)
G2850 NA non-coding downstream 7078 4725986 ~ 4726482 (+)
G2827 NA non-coding downstream 8080 4726988 ~ 4727323 (+)
G2858 NA non-coding downstream 22468 4741376 ~ 4741768 (+)
G3041 NA non-coding downstream 127765 4846673 ~ 4848642 (+)
G3081 NA non-coding downstream 198231 4917139 ~ 4917501 (+)
G2774 NA other upstream 243809 4453778 ~ 4454232 (+)
G579 NA other upstream 2789233 1767917 ~ 1908808 (+)
G435 NA other upstream 3265187 1425121 ~ 1432854 (+)
G350 NA other upstream 4021104 671842 ~ 676937 (+)
G252 NA other upstream 4190969 503209 ~ 507072 (+)
G6811 NA other downstream 5485923 10204831 ~ 10321679 (+)
G6820 NA other downstream 5708315 10427223 ~ 10433018 (+)
G7018 NA other downstream 6259581 10978489 ~ 10980872 (+)
G7153 NA other downstream 6525549 11244457 ~ 11245633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011279 rapgef6 coding CM030133.1 CM030133.1 16540657 ~ 16579592 (-)