G3739


Basic Information

Item Value
gene id G3739
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16075306 ~ 16078797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5337
ATGCTCGGTGTAATGGAGAGTTTTATTGAAAGGAGAAGTAACTGTATTTACTTCTGACAGCAGCTACCCCACAAACCGTACAGAAACACATGGTGCTTTGTCTGTAAATGAAGCTTTATATtgaaactttttcaaaaatttgTAGGCCAGACCAAGTATTTCACTTTGGCGCAAAGAGCTGCATTTAAGCGTGATATTTTAGGACACACtaatcaaaaaaaattgtttttttactattatttgttACAAACATTGCAGTTTCTCTATTGCTGTtagcacattttatttagcCAAGAGTAAAAGTTACACTGTGCTCAGGTTGTTTATGGAGACTCTTCCCTGAGTTTCTTGATCACATGTAAGGCTACGATCTTTGTTGCCAGCATAGCCTCATTACAGGCCTGAGGGATGAAGCTGGGAGGAAGAAGAAACCCGTATCGACCACGATCTTGAAGCTCGAAGGTGAAGGAATACTTTATCCCAAGATTATAAGCCCAGTCATCAGATCCTCCTGGGGCTAAATctatGTTTTTGCACCAGGACCATATTTATAGTTACTCCTGTAATATCTGCGTATCTTTGCCGAGGCCTCCTTAACAAGTTCAAACTGTCAGAAAGAAACATAAACATGCTTAGAAACCGTTTCGCTTTAGATTATTACTGGTCTGGCCTGCTACCAGCGCGTTAACTTCACACACCAGCTCGTTGTGGTTAGAAATCTCATCATAGGAACAGGAGTAAGGAAACATGAGCATCTGAGAGTAGGAGTGAATGGAGAGGTACAGCTTGACCGTGTTCTTATGAGAGCGCAGGAACTGTGCTACAGCTTGggtctctggttcagactccggaAACCGACCGCAATATGTGGGATCGCATGGATTATCGGAGGCCCCCTTTGCTGCAGAACACAGTGAATGGATTAAACCGGGAGAAATATCAGTTGTAAACTCAAATGTCCTCAAAAGTGAAATCTCAGGTTGGACACTAACTGTTCTAAAGAGTATTCTTTATTAATTAGAATTGGTCTGACCCAATTATATCCCTTATGTTGACTTTAGTATCACAAATGTACCAGGATGGCTTACTATTTCTGCACACTATTGCCCACAACCCATTGCATTGGACGAGGATGTGATTAGAACTACAAACAAATGGGATTAAACAAAATGGGGATGATGTTAACTGTGACAAGATGATTGAAAGGGCCGTTTAAATGGTGACAGGATGCATGTAATTAAGCAACAGAGTTTTATAATTCcactaaatatattataatgatgaAGTGGTATGTCCCCAAAGTGTGCATGTTATACACACAAAACTATGCAATTTTGTCTATGCAAAAAGTGCACACACAAATTAGGACACagctttccttttctttcttttttttttttaaacgaaggTCCAGTATTTGGCACCTACTGCACCAGTTTGCATCAAAATTTCTGTTCAGATCGGCTCCAAAACAGTCGCTGTCTTCGTTAGTTGAGCGGCTTTTCCTCCACATACGATCCTGTTTGGGTATACAATAAACCAAAGCAATGGAGActgttttatgattattttttgaataaatactgtgCTAAACTGGGGTCAAGAAAAAGActgcttttaatataaatgtacaattcATAACTACATGTATTAAAACgattcattaaataatactaataattgtataatattactGTTGTCCATGTGTACTTGTATCCATCTGGGTTCAGGACTGTCAAGATGTAAACGTCCATATTGTTCAAAATCTCTGTGATTTCAGTGTTCTGGTTGTAAAAAGATAATGCctgaaaaacagcaacaacaaatcCAAACATTTGTCTcccagcaacaaaaaaaaagtataaaaagtattttaaagcaCACTGAATGACAGCTTAGGGTAAAATAATGCTGGAAGGACCCTTAGATCCTTACAAGCAAATTGTGTGttatgttttgatgtttgttttttttataataatttatttacataatatataatcattagttattcatatgatttattattagatcatgtttaattatttaattattttatcattatatcatgaagcatttaataatgtttctatattttatatttcttatgtatCTTCATCGTTGTTCAATCTCATGCTTGTGGGGTTTTCGTGAACTGTTTTGTCTGTATGAATAGAGATAGATGAGGGGAAAAGTTTGTTTTGGTACAACAGTACATGCTGAGTTTGAGTCATACACATCTAAGATTGTTCAGTAAATTTACTTTCTACCATCATCACTTTGTCTCGGTCAATGTCTTGACTGACATAAGACTGCTAAACACTCATTTGGGCACCAACAGCTCCGCTGACTAGATGTTTTGTTTCTGGACTAATTAATAATTTCTGGCTGGATTAGGCATCCGGGTCTGGATTCTAAGACTGATCTAACAATACTTACATAATTGACAAACCACATGCAAAAGGCTGGAGCGATCCACTCCCGTGCGTGAATACCACAGTCTATCCACATGGCCCTCTTCACCTCATCCCTCCTGCCAGAAAGCTGCAGCATGACGGACAAACAGACATTTGAACTGGGACTGTGTCTGTAATGTGTTCTAAAAAAGATATTCAAGGAATGGCCAGTTCTCTAAACTATACGCAAAATCAAGCTTAAATACGGTGAGAGTACCTTCAGCACATAGAGTGGTCGTTTTTCAAAAGATGACCCGATAAGAATAACTTTCACCATGTCTGAATGGTCTTGTTTGGTCTTGTTTATCCAGTGATATATCTTCTAAAGAATGATATTTCTCATAAAACACGCCTCCACTCCGGGGATCAGATGTATAATTTTTGGTCTGCATCTCAATTAGTGCTGGTGTGTTTTCCAAAAGCATTCtgcaaaaatcacaaataaatctGCAAATATTCACCCTATGAAAAAACTTATAGATTTATGAAAGCAAAAAACCCCTCTGTTGTAACTCGTCAAAGACTAATGCAGGCTAAAAtgtgagttatatatatatatatatatatatatatatacgtgtgtgttatatataagCTATATATAAAACTTTGCTCGCACGTTCATAACacctaaatgaaaaatgtcaggaaataaataatatatccaGTTTTCATATTGACCCCCAACACAACAATGATTAAAGCTTCATACAGCCTTCATTCCACTTTACTTGCCTATAAGTAATGGCATGTTTGCGCAGGACTTCAGTGACGTGCTCCACACTGGTTGAGCGAACGTGAAGGTGAACTTCAGAGTCTGTTGTAATGTAAATGGGTGAAGCAGGCTGCCACAACTCTGT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU5337 True 3316 lncRNA 0.43 3 16075306 16078797

Neighbor

gene id symbol gene type direction distance location
spp2 spp2,LOC107654271,LOC107707843,LOC107588827,LOC107719734,LOC107556720 coding downstream 6011 16066727 ~ 16069295 (-)
snapc3 snapc3 coding downstream 365460 15701109 ~ 15709846 (-)
sugt1 sugt1,sgut1 coding downstream 424997 15632065 ~ 15650309 (-)
dnajb14 dnajb14 coding downstream 448896 15585579 ~ 15626410 (-)
pspc1 pspc1 coding downstream 493765 15527154 ~ 15581541 (-)
c1h3orf70 si:dkey-22o12.2,LOC107588819,LOC107732704,LOC107704345,LOC107699091,LOC107719729,LOC107556711,LOC108435969 coding upstream 230212 16309009 ~ 16321592 (-)
ubac2 ubac2,LOC107704341,LOC107732706,LOC107573193 coding upstream 292691 16371488 ~ 16387107 (-)
dachc dachc,dach1,LOC107732708,LOC107602747,LOC107719724,LOC107699095,LOC108435962 coding upstream 314740 16393537 ~ 16435858 (-)
dis3 dis3,LOC107699072 coding upstream 374966 16453763 ~ 16464140 (-)
dlx2b dlx2b,LOC107699078,LOC107556695,LOC107704335,LOC107602735,LOC107719742,LOC107708688 coding upstream 399745 16478542 ~ 16480216 (-)
G3735 NA non-coding downstream 58147 16016762 ~ 16017159 (-)
G3697 NA non-coding downstream 232496 15842355 ~ 15842810 (-)
G3681 NA non-coding downstream 375344 15699710 ~ 15699962 (-)
G3679 NA non-coding downstream 376295 15698487 ~ 15699011 (-)
G3678 NA non-coding downstream 377001 15696585 ~ 15698305 (-)
G3758 NA non-coding upstream 29529 16108326 ~ 16108610 (-)
G3760 NA non-coding upstream 32341 16111138 ~ 16111548 (-)
G3819 NA non-coding upstream 185295 16264092 ~ 16264358 (-)
G3832 NA non-coding upstream 221607 16300404 ~ 16300673 (-)
G3835 NA non-coding upstream 228180 16306977 ~ 16307276 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other downstream 1386 16069177 ~ 16073920 (-)
G3571 NA other downstream 844420 15230539 ~ 15230886 (-)
G3515 coro2a other downstream 1045686 15020642 ~ 15029620 (-)
G3522 NA other downstream 1149943 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 1156520 14898201 ~ 14918786 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 80895 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 255405 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 368291 16447088 ~ 16448519 (-)
LOC122330431 lsm6 other upstream 1355920 17434717 ~ 17436707 (-)
smad1 smad1,LOC107684445,LOC107734580 other upstream 1667040 17745837 ~ 17764732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G206916 NA non-coding CI01000049 null 857432 ~ 859882 (-)