RNA id: TU5337


Basic Information

Item Value
RNA id TU5337
length 3316
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G3739
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16075306 ~ 16078797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTCGGTGTAATGGAGAGTTTTATTGAAAGGAGAAGTAACTGTATTTACTTCTGACAGCAGCTACCCCACAAACCGTACAGAAACACATGGTGCTTTGTCTGTAAATGAAGCTTTATATtgaaactttttcaaaaatttgTAGGCCAGACCAAGTATTTCACTTTGGCGCAAAGAGCTGCATTTAAGCGTGATATTTTAGGACACACtaatcaaaaaaaattgtttttttactattatttgttACAAACATTGCAGTTTCTCTATTGCTGTtagcacattttatttagcCAAGAGTAAAAGTTACACTGTGCTCAGGTTGTTTATGGAGACTCTTCCCTGAGTTTCTTGATCACATGTAAGGCTACGATCTTTGTTGCCAGCATAGCCTCATTACAGGCCTGAGGGATGAAGCTGGGAGGAAGAAGAAACCCGTATCGACCACGATCTTGAAGCTCGAAGGTGAAGGAATACTTTATCCCAAGATTATAAGCCCAGTCATCAGATCCTCCTGGGGCTAAATctatGTTTTTGCACCAGGACCATATTTATAGTTACTCCTGTAATATCTGCGTATCTTTGCCGAGGCCTCCTTAACAAGTTCAAACTGTCAGAAAGAAACATAAACATGCTTAGAAACCGTTTCGCTTTAGATTATTACTGGTCTGGCCTGCTACCAGCGCGTTAACTTCACACACCAGCTCGTTGTGGTTAGAAATCTCATCATAGGAACAGGAGTAAGGAAACATGAGCATCTGAGAGTAGGAGTGAATGGAGAGGTACAGCTTGACCGTGTTCTTATGAGAGCGCAGGAACTGTGCTACAGCTTGggtctctggttcagactccggaAACCGACCGCAATATGTGGGATCGCATGGATTATCGGAGGCCCCCTTTGCTGCAGAACACAGTGAATGGATTAAACCGGGAGAAATATCAGTTGTAAACTCAAATGTCCTCAAAAGTGAAATCTCAGGTTGGACACTAACTGTTCTAAAGAGTATTCTTTATTAATTAGAATTGGTCTGACCCAATTATATCCCTTATGTTGACTTTAGTATCACAAATGTACCAGGATGGCTTACTATTTCTGCACACTATTGCCCACAACCCATTGCATTGGACGAGGATGTGATTAGAACTACAAACAAATGGGATTAAACAAAATGGGGATGATGTTAACTGTGACAAGATGATTGAAAGGGCCGTTTAAATGGTGACAGGATGCATGTAATTAAGCAACAGAGTTTTATAATTCcactaaatatattataatgatgaAGTGGTATGTCCCCAAAGTGTGCATGTTATACACACAAAACTATGCAATTTTGTCTATGCAAAAAGTGCACACACAAATTAGGACACagctttccttttctttcttttttttttttaaacgaaggTCCAGTATTTGGCACCTACTGCACCAGTTTGCATCAAAATTTCTGTTCAGATCGGCTCCAAAACAGTCGCTGTCTTCGTTAGTTGAGCGGCTTTTCCTCCACATACGATCCTGTTTGGGTATACAATAAACCAAAGCAATGGAGActgttttatgattattttttgaataaatactgtgCTAAACTGGGGTCAAGAAAAAGActgcttttaatataaatgtacaattcATAACTACATGTATTAAAACgattcattaaataatactaataattgtataatattactGTTGTCCATGTGTACTTGTATCCATCTGGGTTCAGGACTGTCAAGATGTAAACGTCCATATTGTTCAAAATCTCTGTGATTTCAGTGTTCTGGTTGTAAAAAGATAATGCctgaaaaacagcaacaacaaatcCAAACATTTGTCTcccagcaacaaaaaaaaagtataaaaagtattttaaagcaCACTGAATGACAGCTTAGGGTAAAATAATGCTGGAAGGACCCTTAGATCCTTACAAGCAAATTGTGTGttatgttttgatgtttgttttttttataataatttatttacataatatataatcattagttattcatatgatttattattagatcatgtttaattatttaattattttatcattatatcatgaagcatttaataatgtttctatattttatatttcttatgtatCTTCATCGTTGTTCAATCTCATGCTTGTGGGGTTTTCGTGAACTGTTTTGTCTGTATGAATAGAGATAGATGAGGGGAAAAGTTTGTTTTGGTACAACAGTACATGCTGAGTTTGAGTCATACACATCTAAGATTGTTCAGTAAATTTACTTTCTACCATCATCACTTTGTCTCGGTCAATGTCTTGACTGACATAAGACTGCTAAACACTCATTTGGGCACCAACAGCTCCGCTGACTAGATGTTTTGTTTCTGGACTAATTAATAATTTCTGGCTGGATTAGGCATCCGGGTCTGGATTCTAAGACTGATCTAACAATACTTACATAATTGACAAACCACATGCAAAAGGCTGGAGCGATCCACTCCCGTGCGTGAATACCACAGTCTATCCACATGGCCCTCTTCACCTCATCCCTCCTGCCAGAAAGCTGCAGCATGACGGACAAACAGACATTTGAACTGGGACTGTGTCTGTAATGTGTTCTAAAAAAGATATTCAAGGAATGGCCAGTTCTCTAAACTATACGCAAAATCAAGCTTAAATACGGTGAGAGTACCTTCAGCACATAGAGTGGTCGTTTTTCAAAAGATGACCCGATAAGAATAACTTTCACCATGTCTGAATGGTCTTGTTTGGTCTTGTTTATCCAGTGATATATCTTCTAAAGAATGATATTTCTCATAAAACACGCCTCCACTCCGGGGATCAGATGTATAATTTTTGGTCTGCATCTCAATTAGTGCTGGTGTGTTTTCCAAAAGCATTCtgcaaaaatcacaaataaatctGCAAATATTCACCCTATGAAAAAACTTATAGATTTATGAAAGCAAAAAACCCCTCTGTTGTAACTCGTCAAAGACTAATGCAGGCTAAAAtgtgagttatatatatatatatatatatatatatatacgtgtgtgttatatataagCTATATATAAAACTTTGCTCGCACGTTCATAACacctaaatgaaaaatgtcaggaaataaataatatatccaGTTTTCATATTGACCCCCAACACAACAATGATTAAAGCTTCATACAGCCTTCATTCCACTTTACTTGCCTATAAGTAATGGCATGTTTGCGCAGGACTTCAGTGACGTGCTCCACACTGGTTGAGCGAACGTGAAGGTGAACTTCAGAGTCTGTTGTAATGTAAATGGGTGAAGCAGGCTGCCACAACTCTGT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5330 lncRNA downstream 58147 16016762 ~ 16017159 (-) True G3735
TU5281 lncRNA downstream 232496 15842355 ~ 15842810 (-) True G3697
TU5265 lncRNA downstream 375344 15699710 ~ 15699962 (-) True G3681
TU5263 lncRNA downstream 376295 15698487 ~ 15699011 (-) True G3679
TU5262 lncRNA downstream 377001 15696585 ~ 15698305 (-) True G3678
TU5359 lncRNA upstream 29529 16108326 ~ 16108610 (-) True G3758
TU5361 lncRNA upstream 32341 16111138 ~ 16111548 (-) True G3760
TU5363 lncRNA upstream 80895 16159692 ~ 16160594 (-) False march4l
TU5453 lncRNA upstream 185295 16264092 ~ 16264358 (-) True G3819
TU5466 lncRNA upstream 221607 16300404 ~ 16300673 (-) True G3832
XM_043246241.1 mRNA downstream 1386 16070962 ~ 16073920 (-) True alg11
XM_043246259.1 mRNA downstream 6011 16066727 ~ 16069295 (-) True spp2
XM_043232636.1 mRNA downstream 365460 15701109 ~ 15709846 (-) True snapc3
XM_043242847.1 mRNA downstream 424997 15632065 ~ 15650309 (-) True sugt1
XM_043241066.1 mRNA downstream 448896 15585579 ~ 15626410 (-) True dnajb14
XM_043240150.1 mRNA upstream 81090 16159887 ~ 16198263 (-) True march4l
XM_043247638.1 mRNA upstream 230212 16309009 ~ 16321592 (-) True c1h3orf70
XM_043235354.1 mRNA upstream 259911 16338708 ~ 16359025 (-) False igf2bp2b
XM_043244326.1 mRNA upstream 292691 16371488 ~ 16387107 (-) False ubac2
XM_043244320.1 mRNA upstream 292691 16371488 ~ 16387107 (-) False ubac2
XR_006251556.1 other downstream 1386 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 844420 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 1045686 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 1149943 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 1326331 14746829 ~ 14748975 (-) True G3491
XR_006250498.1 other upstream 1737027 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 3457175 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 4018158 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 4033953 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 4034345 20113142 ~ 20113213 (-) True trnae-cuc_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU234813 True 2330 lncRNA 0.36 2 CI01000049 857432 ~ 859882 (-)