RNA id: XM_043232636.1


Basic Information

Item Value
RNA id XM_043232636.1
length 1454
RNA type mRNA
GC content 0.40
exon number 9
gene id snapc3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15701109 ~ 15709846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCATCGTCATGGAAGAAGAAGAATCTGCGGCAATGATGTTTCACAGCTCGTTATGGCTGAATGCGGTGTTTCGTTGTGCGAAGAAAAGTCACATGAAAACGTGCCTGTTTATGAGTTTACAGATGTAAACTCTAAGGAGTTTCATATCGGCACATTTAGATATTTGTGGCAGGATGTGTTAAATCCGGAGCTGTATTCATATACTGACACAGCCCCAGAGATAGAGGACGTAAAATTCATCGAAGAGCTAGGCATTGAGCCAAAGACGCTGGAGGAACTCAAAAGCATCTGCAGTGTTGATTTTCTGAGAAGTGGACACAAAGATACAGACAGTGTGCCGTCAGATCTTCATTTATCCACACTAAAATTACGCAAGAGAAGACAAGATTATAAAGAAACTCTTACCAGAGACACTGTTGACAGACATGAAGTATATGCCAGTGAAATGgaGATGATATCTGTGGGTAAGAAGCCTGATAACCTCAGAGACCTGATTCCTGAGGGAGAACTCATATTGACCTTTAATATTATGTATCCCATTCTGTTTCAGCGGTTTAAGCATGTGAGGGCATATCAGACTCTACATGTTTTAGGCTCTCAGAAGCTAAGTGATCTTAGAGATGCCATCTGCTGCGTGAGTGACCTGCAGGTGTTTGGAGAGTTCAGCAACACTCCGGATATGGTACCACAGTTCATCAGCAAGGATCATTACAAGTCTGCCTTCTTTTTCTTCAATGGAACCTTCTTCAGTGACACACGGTATCCAGAATGTCAAGACATCAGCATGACCACACAGGAGTGGGCCCAAACCAGAGACTTCCCAGAATTCAAGACTGCCAAGATGGAAGACACCTCTTTCTGtgacctgaaaatgaaaattgggTTTCCATATTTATACACCCACCAAGGTGATTGCGAGCACGTTGTTATCCTCACTGATATCAGATTGGTGCATCAGGATGACTGTTTGGACATAAATCTCTACCCACTCATAACTCACAAGCACAGAGTTGTGACTCGGAAGTGTTCTGTGTGTCATCTCTATATCAGCAGGTGGATTACAACCAGTGATGCTTTTGCCCCTACGGACCCCTGCCTGTTTTGTGACCAGTGCTTTCGAATGTTTCATTATGAtgataaaggaaaaaaactagGAAATTTCCTGGCCTATGCCTATGTTGATCCAGGCACATTTAATTGATCTCAAACTATActattgttatattgtttgtaaatgtattgtGAGAATTAtgttattcactttttttggaaTTGATTTCAATACAGTTACCACAATAAACTTTGtatatctctttttttcatattggAATGTCCACAGCTGtaaactttaaatgtattagGAATTAATTTATGAACTAGATCCTTAAGTGAATAATGTGTCTACTTTCACTGTTGCCCCACTATTATTAAAAACCTTATTTTGTGTTATGCA

Function

GO: NA

KEGG:

id description
K15210 SNAPC3; snRNA-activating protein complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5265 lncRNA downstream 1147 15699710 ~ 15699962 (-) True G3681
TU5263 lncRNA downstream 2098 15698487 ~ 15699011 (-) True G3679
TU5262 lncRNA downstream 2804 15696585 ~ 15698305 (-) True G3678
TU5261 lncRNA downstream 5193 15694798 ~ 15695916 (-) True G3677
TU5241 lncRNA downstream 46958 15653938 ~ 15654151 (-) True G3659
TU5281 lncRNA upstream 132509 15842355 ~ 15842810 (-) True G3697
TU5330 lncRNA upstream 306916 16016762 ~ 16017159 (-) True G3735
TU5332 lncRNA upstream 336597 16046443 ~ 16104201 (-) True G3737
TU5337 lncRNA upstream 365460 16075306 ~ 16078797 (-) True G3739
TU5359 lncRNA upstream 398480 16108326 ~ 16108610 (-) True G3758
XM_043242847.1 mRNA downstream 50800 15632065 ~ 15650309 (-) True sugt1
XM_043241066.1 mRNA downstream 74699 15585579 ~ 15626410 (-) True dnajb14
XM_043246182.1 mRNA downstream 119568 15527154 ~ 15581541 (-) True pspc1
XM_043237474.1 mRNA downstream 522799 15097021 ~ 15178310 (-) False cntln
XM_043246259.1 mRNA upstream 356881 16066727 ~ 16069295 (-) True spp2
XM_043246241.1 mRNA upstream 361116 16070962 ~ 16073920 (-) True alg11
XM_043240150.1 mRNA upstream 450041 16159887 ~ 16198263 (-) True march4l
XM_043247638.1 mRNA upstream 599163 16309009 ~ 16321592 (-) True c1h3orf70
XM_043235354.1 mRNA upstream 628862 16338708 ~ 16359025 (-) False igf2bp2b
TU5142 other downstream 470223 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 671489 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 775746 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 952134 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 1816873 13882278 ~ 13884236 (-) False LOC122350629
XR_006251556.1 other upstream 359331 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 2105978 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 3826126 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 4387109 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 4402904 20112750 ~ 20112821 (-) True trnam-cau

Expression Profile