G80987


Basic Information

Item Value
gene id G80987
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11230185 ~ 11249173 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119800
ttatatttattttatgcaaattaatatgcagaaaatgcattaatgtttgGATACATTTTAGGcgtttttgctgttttgagcttacatttttaaatggactATTTTTCCGTTTCTAAAATGGAGCGAAATATGACTGTTCTTCATATGCACTACACATAAAAAGACGTGCGTCACGATGGCCGTCAGGGGCGTGACATCAGCAGGAAGGGGTGTGGCTGAGTCAATAAAGCGCTGGCGTTTCCTTGGAAACCTTTAGttccaaaaaaacacaatagaaaattAAATCTGCAGATCCCAGAATCCCAGTGAGTGATCATGAGTGAGTGTATTTGGTTCAGAAGATTCTCTTAAATCTCATCTATTATGTACAGCaggtgtctctctctctctctctcacgcacacacacacacacacacacacacacacacacacacacacacacaca
>TU119801
ttatatttattttatgcaaattaatatgcagaaaatgcattaatgtttgGATACATTTTAGGcgtttttgctgttttgagcttacatttttaaatggactATTTTTCCGTTTCTAAAATGGAGCGAAATATGACTGTTCTTCATATGCACTACACATAAAAAGACGTGCGTCACGATGGCCGTCAGGGGCGTGACATCAGCAGGAAGGGGTGTGGCTGAGTCAATAAAGCGCTGGCGTTTCCTTGGAAACCTTTAGttccaaaaaaacacaatagaaaattAAATCTGCAGATCCCAGAATCCCAGTGAGTGATCATGAGTGAGTGTATTTGGTTCAGAAGATTCTCTTAAATCTCATCTATTATGTACAGCaggtgtctctctctctctctcacgcacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119800 True 446 lncRNA 0.39 2 11230185 11249173
TU119801 False 444 lncRNA 0.39 2 11230185 11249173

Neighbor

gene id symbol gene type direction distance location
srsf11 srsf11,LOC103035453,LOC107101867 coding downstream 3558 11217681 ~ 11226627 (-)
plaat1 hrasls,LOC107569888,LOC107713876,LOC107693015,LOC108435900 coding downstream 35969 11190233 ~ 11194216 (-)
sos1 sos1,LOC106564790 coding downstream 47413 11148740 ~ 11182772 (-)
LOC122354292 hnrnpll,LOC106564787 coding downstream 105162 11098533 ~ 11125023 (-)
zgc:158270 atl2,LOC107562495,LOC107749625,LOC108441890 coding downstream 136096 11081574 ~ 11094089 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889 coding upstream 42246 11291419 ~ 11301952 (-)
LOC122353684 NA coding upstream 65393 11314566 ~ 11318562 (-)
aspscr1 aspscr1,LOC107726919,LOC107572045 coding upstream 71208 11320381 ~ 11337632 (-)
tmc6b tmc6,LOC107564572 coding upstream 103910 11353083 ~ 11373836 (-)
tk1 tk1,LOC107713239,LOC107726782,LOC107577227 coding upstream 155829 11405002 ~ 11417251 (-)
G80964 NA non-coding downstream 15717 11210953 ~ 11214468 (-)
G80981 NA non-coding downstream 27041 11202058 ~ 11203144 (-)
G80980 NA non-coding downstream 28517 11198612 ~ 11201668 (-)
G80952 NA non-coding downstream 41978 11169276 ~ 11188207 (-)
LOC122354511 NA non-coding downstream 99872 11128314 ~ 11130313 (-)
G80965 NA non-coding upstream 781 11249954 ~ 11250552 (-)
G80958 syngr2b,LOC107572044,LOC107700198,LOC107713240,LOC107702021,LOC107564563 non-coding upstream 84806 11333979 ~ 11399132 (-)
G81018 LOC107564562,LOC107702029,LOC107713253 non-coding upstream 135203 11384376 ~ 11387053 (-)
G81023 NA non-coding upstream 209265 11458438 ~ 11464719 (-)
G81025 NA non-coding upstream 220182 11469355 ~ 11469584 (-)
srsf7b srsf7,LOC107665899,LOC107693014 other downstream 85115 11136170 ~ 11145070 (-)
LOC122354338 LOC107698785 other downstream 232732 10993300 ~ 10997453 (-)
LOC122353594 rfc4 other downstream 464348 10762491 ~ 10765837 (-)
LOC122354283 mfn2,LOC107710790,LOC107748965,LOC107602467,LOC107698839,LOC107678429,LOC107701405,LOC107552408,LOC107661155,LOC107558363,LOC107706807 other downstream 471343 10751197 ~ 10758842 (-)
G80581 dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773 other downstream 975337 10245602 ~ 10254848 (-)
si:ch73-100l22.3 NA other upstream 2082 11251255 ~ 11261294 (-)
mafgb mafgb,mafg,mafga,LOC107564557,LOC107702026,LOC107657334,LOC108437166,LOC106533856,LOC107739593,LOC103140971,LOC106920092,LOC107376449 other upstream 14159 11263332 ~ 11286218 (-)
LOC122354635 NA other upstream 141419 11390592 ~ 11394876 (-)
G80956 NA other upstream 154471 11403644 ~ 11419330 (-)
strn strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087 other upstream 287327 11536500 ~ 11631687 (-)

Expression


Co-expression Network