scn3b (scn3b,LOC107670963,LOC107709134,LOC107586232,LOC107717288,LOC107731150)


Basic Information

Item Value
gene id scn3b
gene name scn3b,LOC107670963,LOC107709134,LOC107586232,LOC107717288,LOC107731150
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12773305 ~ 12782785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259414.1
GTAAGTGGCTACTTAGTAAGAAAACAAAGACGGGCGTCTGTTATTCTACGGCTGCGGTAGACGACGGTTTGACGATGGAGCGTCTGTACTGCTCATGTGGGTGCAGTAGGGCACAAAGGGAACTTCCCTGTCACTGACCTCTATTTAAAAGAGCTTGTTGTGGATGCGccgaggttttttttttattcctcgcGAATTTTCTACAGGAATCATTAAGATCCACAGGTCTTTATATTCACGCGCATCACCACGGAACGGCGGCGTCCGCTTCTAGTAAAACACGTTTACGGATGACTGCTCCCCGGAAGACTCAATCTAGGACGCCGCCCTGTTGTTAGATCTCCCAGTATGTCAACAGACATGAGGCTCGTGCTGCATTTGCTATTGCTCTTCATCCTTGCTGTTCAGGAGGTCAGGCTGGTGTGTGTGGACGTGGCTTCAGACACAGATGCCACCGTAGGCAGTGCTATGAAATTAACCTGCATCTACTGCATGAAACGAGAGGAGATCTCTGCCGAGACCAAAGTGGACTGGTTCTACACCGGTTCTGCATCAGATTACAGAAGAATGCTTATCTATCAGTACAACCGTGAGCCGCAGGAGCCAAAGAACACAGAAATGTATTGGAAGGGCCGTCTGATGTGGATTGGCAGCAAGGACCTGCAGGACATCTCCATTAGCATCAAAAATGTCACCGCAAATGACTCTGGCACGTACGAATGTGAGGTGTCACGCTTCTTTGCGTTCGATTCTTTCAAGCATTCCACCACCAAGACGATCACAATTGAACTGAAGGTAAAAATGCAAGggAGTGTAGACACCACAGCGCTGTACTCAGAGATCATGATGTATGTACTGCTGGTTTTTCTCACATTTTGGTTGCTGGTGGAAATGATCTACTGCTACAGGAAGATCTCCAAATCTGAGGAACTGGCTCAGGACCCCGCGACAGACTACTTAGCCATTCCctctgaaaataaagaaaacccGGGCCCCGCTGTAACGGAATAAAAGTCTCACGCTATTACGGTACTGACGATTCTTAATAGCAAGAAGTTTAAAAATGGAGAATAGGCACTGATCTTGTTCTGACCCTCAAAGAGCTGCTCTGAGAAACAAGGAAAGCTGCCAAATCAAATCCCTCTCGTCTTGATAATGTGATGTGTGGAACAAACCCTTGACTGGTTCATTATCTCCCGCTGTCTCGGTGGAGGTCAGCAGTAACACACGTCTAATCTCAGACCGATGAGGATCTGTATGTGTCTGCCCTCAACTTTTGCCTTAGTAGAGACACATACAGCAGCCCGGAGCTGAAGAGCTATCATACTGCCTATACACGCACTTTTCTTAATCAAACGTCAATCATTACCGTCACAACGCCTGTGTGAGCCTTTCCCTCTTTGGTATACGCTCTTCTTACTCTTTTGATAGAAATAGATGAAGATAAGTCTGGATTCCGATTAGACTTGGtttttattgctgtattttcTATAGAAATCCTACTGTCGTATTTTGgggttttattgctttttatttaaaaacaacaaactccGCTTTGTAACTTTGCAATCAATCATCAGTCAAAACGGTGGCAGGTAAATGGCTGCCGTGAGGAGTGTGATTGAACACACTTGtcatttgtgtttacattggTCACAGCGGCATTAAAGCAACTTCTTGGGATTGACACTAGCACTAGTCTGAACGGcgtaattattacattattccATCAATGGCGGTTTGTACCGAAGCCACATCGCCTATCCTGTTGTTATTGTTGAGTGACGTTCAGCAGCGGCAGAAATCTGTATACGGTAAAAACTCGCTTGACAATTCTACACATTCATTTCAGACTGACTGTGAACAGTCGTTTAAACCAGTAACGCAATCTCTTCAGCTGTcctaaataactgtttttatttacttttttcactGTTGCTATAATGAATTTATAGATTTGGATTtctcatgttttatttctatCGGTGCCGGCTTGCCACTGTTAACTTTGCCTTTTGCatcgttatatatatatatatatatatatatatatatatatatatatataggtcacCATAGAAACACAGCGCTTGCTCTGCCCTGTTATAATGGAGCTGCTCATCACTTGTCAGAggttgtcatgtttattaaacCAGGTGATGCATTCCAAAA
>XM_043259415.1
AGTAAGTGGCTACTTAGTAAGAAAACAAAGACGGGCGTCTGTTATTCTACGGCTGCGGTAGACGACGGTTTGACGATGGAGCGTCTGTACTGCTCATGTGGGTGCAGTAGGGCACAAAGGGAACTTCCCTGTCACTGACCTCTATTTAAAAGAGCTTGTTGTGGATGCGccgaggttttttttttattcctcgcGAATTTTCTACAGGAATCATTAAGATCCACAGGTCTTTATATTCACGCGCATCACCACGGAACGGCGGCGTCCGCTTCTAGTAAAACACGTTTACGGATGACTGCTCCCCGGAAGACTCAATCTAGGACGCCGCCCTGTTGTTAGATCTCCCAGTATGTCAACAGACATGAGGCTCGTGCTGCATTTGCTATTGCTCTTCATCCTTGCTGTTCAGGAGGTCAGGCTGGTGTGTGTGGACGTGGCTTCAGACACAGATGCCACCGTAGGCAGTGCTATGAAATTAACCTGCATCTACTGCATGAAACGAGAGGAGATCTCTGCCGAGACCAAAGTGGACTGGTTCTACACCGGTTCTGCATCAGATTACAGAAGAATGCTTATCTATCAGTACAACCGTGAGCCGCAGGAGCCAAAGAACACAGAAATGTATTGGAAGGGCCGTCTGATGTGGATTGGCAGCAAGGACCTGCAGGACATCTCCATTAGCATCAAAAATGTCACCGCAAATGACTCTGGCACGTACGAATGTGAGGTGTCACGCTTCTTTGCGTTCGATTCTTTCAAGCATTCCACCACCAAGACGATCACAATTGAACTGAAGGTAAAAATGCAAGggAGTGTAGACACCACAGCGCTGTACTCAGAGATCATGATGTATGTACTGCTGGTTTTTCTCACATTTTGGTTGCTGGTGGAAATGATCTACTGCTACAGGAAGATCTCCAAATCTGAGGAACTGGCTCAGGACCCCGCGTACTGACGATTCTTAATAGCAAGAAGTTTAAAAATGGAGAATAGGCACTGATCTTGTTCTGACCCTCAAAGAGCTGCTCTGAGAAACAAGGAAAGCTGCCAAATCAAATCCCTCTCGTCTTGATAATGTGATGTGTGGAACAAACCCTTGACTGGTTCATTATCTCCCGCTGTCTCGGTGGAGGTCAGCAGTAACACACGTCTAATCTCAGACCGATGAGGATCTGTATGTGTCTGCCCTCAACTTTTGCCTTAGTAGAGACACATACAGCAGCCCGGAGCTGAAGAGCTATCATACTGCCTATACACGCACTTTTCTTAATCAAACGTCAATCATTACCGTCACAACGCCTGTGTGAGCCTTTCCCTCTTTGGTATACGCTCTTCTTACTCTTTTGATAGAAATAGATGAAGATAAGTCTGGATTCCGATTAGACTTGGtttttattgctgtattttcTATAGAAATCCTACTGTCGTATTTTGgggttttattgctttttatttaaaaacaacaaactccGCTTTGTAACTTTGCAATCAATCATCAGTCAAAACGGTGGCAGGTAAATGGCTGCCGTGAGGAGTGTGATTGAACACACTTGtcatttgtgtttacattggTCACAGCGGCATTAAAGCAACTTCTTGGGATTGACACTAGCACTAGTCTGAACGGcgtaattattacattattccATCAATGGCGGTTTGTACCGAAGCCACATCGCCTATCCTGTTGTTATTGTTGAGTGACGTTCAGCAGCGGCAGAAATCTGTATACGGTAAAAACTCGCTTGACAATTCTACACATTCATTTCAGACTGACTGTGAACAGTCGTTTAAACCAGTAACGCAATCTCTTCAGCTGTcctaaataactgtttttatttacttttttcactGTTGCTATAATGAATTTATAGATTTGGATTtctcatgttttatttctatCGGTGCCGGCTTGCCACTGTTAACTTTGCCTTTTGCatcgttatatatatatatatatatatatatatatatatatatatatataggtcacCATAGAAACACAGCGCTTGCTCTGCCCTGTTATAATGGAGCTGCTCATCACTTGTCAGAggttgtcatgtttattaaacCAGGTGATGCATTCCAAAA
>XM_043259416.1
GAGTAAGTGGCTACTTAGTAAGAAAACAAAGACGGGCGTCTGTTATTCTACGGCTGCGGTAGACGACGGTTTGACGATGGAGCGTCTGTACTGCTCATGTGGGTGCAGTAGGGCACAAAGGGAACTTCCCTGTCACTGACCTCTATTTAAAAGAGCTTGTTGTGGATGCGccgaggttttttttttattcctcgcGAATTTTCTACAGGAATCATTAAGATCCACAGGTCTTTATATTCACGCGCATCACCACGGAACGGCGGCGTCCGCTTCTAGTAAAACACGTTTACGGATGACTGCTCCCCGGAAGACTCAATCTAGGACGCCGCCCTGTTGTTAGATCTCCCAGTATGTCAACAGACATGAGGCTCGTGCTGCATTTGCTATTGCTCTTCATCCTTGCTGTTCAGGAGGTCAGGCTGGTGTGTGTGGACGTGGCTTCAGACACAGATGCCACCGTAGGCAGTGCTATGAAATTAACCTGCATCTACTGCATGAAACGAGAGGAGATCTCTGCCGAGACCAAAGTGGACTGGTTCTACACCGGTTCTGCATCAGATTACAGAAGAATGCTTATCTATCAGTACAACCGTGAGCCGCAGGAGCCAAAGAACACAGAAATGTATTGGAAGGGCCGTCTGATGTGGATTGGCAGCAAGGACCTGCAGGACATCTCCATTAGCATCAAAAATGTCACCGCAAATGACTCTGGCACGTACGAATGTGAGGTGTCACGCTTCTTTGCGTTCGATTCTTTCAAGCATTCCACCACCAAGACGATCACAATTGAACTGAAGGTAAAAATGCAAGCCTACTTATTGGAAGGCAGGAAGTTGTTTTCAGGGCTTTATCTAAGCAGCCACTTACCTCTCTATCTGTTGTAAGGGGTAATGTAAAGATTCTGGTTTGTATGCTATTCTCTGGATGCCTGAGATTGCTGAATGCGGAGTACTTCCTCTCACTTCAATCGAATATACTTTACCTAATGTATATTTGTCTATATTTAATCATGCAACCGCAATGCATCATCTCTATCTGCGAGTGTCTCGGTTCGCAGATAGAAATAGACAATGTTGTATTTAAGTGGTGGGTTTAGAGGATATTTTGAATTGCAAGTAGCCTTCCAGAACCACAAACTTACAGTACAACTCTgcttttacattcagtgccattTAGATCTGTTCACTGCAGTGCATAAGACATTTGTAAAGATACTCTTTATAATGCGATCACTGGTCCTTTTTGACAATTGTACAATATTTTGTAGCACTTGTTTTGCATAGCACTAAAATGTCACATGCGCTGCACTATCATTTATGAATACAGAGGTTCTCACCTTTTAAAACCCATTTTTGAATGCCGTTGATAAATTATTCATGTAATCAGATCAGTGTGGGCGGGCTTCTGCTCTAAAGGGTGAAGCTGAGAACCTCTGACCACGCAGtcattttgtgttcatttttaaaagacaactTTTACCTGTCTTATAGTATGACATACAAAGTCTCATTGTCTTTGAAGGGACAGCTGATTTGAAGCATCTCAGCATGTTTGTTTCATTGtgtggttttgtgtttgcatgcaaATGATTTCTTTTAAGGGACaggcagaaaaataaaatgtatcaatttCTGTCTAATGAACAGAACTTTAAAAggataattcaccccaaaatgtttACTTCCCAAACCTGCATTAatgactttcttctgcagaacacaaaatcAAATAGTTGTGGTTCCCATTTACTTTAGTTATATTATTGCAATAGAAGTCAATGAGAACCAACACTGAACAcccttcaaaataaattatttgtaatgtttcaaaaaagattccatttccatttttggtcaaactacccccttaaattaaaatgtttttttcttttatattactattattattattatatattttatttacattttcttaccAGTAGTTGATTCATTTGGATTTTCTGCAGATCTTCTGTGCATGCAATGCTTTTGTTcacataacaaaaaataaagtggttaaaattgtaatatcaTTGTAATATCGCTGAGGTGACTTACAGATGCAATTGGTTAGTTTTCTGGTGACCTGAAATAGCTTTAATGACTCTTCTAATGCATTACAGCAGATCAGCTATATTTTGACTTGCCCACTCATGCATTTTGCACCTTTGTCCTCATTTTCAGTACACTTGAGACTGTCTGAGTCACTTTCTGGATGAATTCATCACAGACATCCTTAGTGGCATCGTATCAGTCCAACAGACCTCCTCTGATTGCTCAATTAATTGCACAAAATTCCCTCTGattgcatattttctttttctcagggAGTGTAGACACCACAGCGCTGTACTCAGAGATCATGATGTATGTACTGCTGGTTTTTCTCACATTTTGGTTGCTGGTGGAAATGATCTACTGCTACAGGAAGATCTCCAAATCTGAGGAACTGGCTCAGGACCCCGC
>XM_043259417.1
GAGTAAGTGGCTACTTAGTAAGAAAACAAAGACGGGCGTCTGTTATTCTACGGCTGCGGTAGACGACGGTTTGACGATGGAGCGTCTGTACTGCTCATGTGGGTGCAGTAGGGCACAAAGGGAACTTCCCTGTCACTGACCTCTATTTAAAAGAGCTTGTTGTGGATGCGccgaggttttttttttattcctcgcGAATTTTCTACAGGAATCATTAAGATCCACAGGTCTTTATATTCACGCGCATCACCACGGAACGGCGGCGTCCGCTTCTAGTAAAACACGTTTACGGATGACTGCTCCCCGGAAGACTCAATCTAGGACGCCGCCCTGTTGTTAGATCTCCCAGTATGTCAACAGACATGAGGCTCGTGCTGCATTTGCTATTGCTCTTCATCCTTGCTGTTCAGGAGGTCAGGCTGGTGTGTGTGGACGTGGCTTCAGACACAGATGCCACCGTAGGCAGTGCTATGAAATTAACCTGCATCTACTGCATGAAACGAGAGGAGATCTCTGCCGAGACCAAAGTGGACTGGTTCTACACCGGTTCTGCATCAGATTACAGAAGAATGCTTATCTATCAGTACAACCGTGAGCCGCAGGAGCCAAAGAACACAGAAATGTATTGGAAGGGCCGTCTGATGTGGATTGGCAGCAAGGACCTGCAGGACATCTCCATTAGCATCAAAAATGTCACCGCAAATGACTCTGGCACGTACGAATGTGAGGTGTCACGCTTCTTTGCGTTCGATTCTTTCAAGCATTCCACCACCAAGACGATCACAATTGAACTGAAGGTAAAAATGCAAGCCTACTTATTGGAAGGCAGGAAGTTGTTTTCAGGGCTTTATCTAAGCAGCCACTTACCTCTCTATCTGTTGTAAGGGggAGTGTAGACACCACAGCGCTGTACTCAGAGATCATGATGTATGTACTGCTGGTTTTTCTCACATTTTGGTTGCTGGTGGAAATGATCTACTGCTACAGGAAGATCTCCAAATCTGAGGAACTGGCTCAGGACCCCG

Function

symbol description
scn3b Predicted to enable sodium channel inhibitor activity and transmembrane transporter binding activity. Predicted to be involved in regulation of heart rate by cardiac conduction; regulation of sodium ion transmembrane transporter activity; and ventricular cardiac muscle cell action potential. Predicted to act upstream of or within regulation of ion transmembrane transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Is expressed in atrium; brain; cardiac ventricle; and eye. Human ortholog(s) of this gene implicated in Brugada syndrome 7. Orthologous to human SCN3B (sodium voltage-gated channel beta subunit 3).

NR:

description
sodium channel subunit beta-3-like

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0017080 sodium channel regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259414.1 False 2172 mRNA 0.44 7 12773305 12782783
XM_043259415.1 False 2091 mRNA 0.43 6 12773305 12782784
XM_043259416.1 True 2465 mRNA 0.40 5 12778236 12782785
XM_043259417.1 False 1025 mRNA 0.48 6 12778237 12782785

Neighbor

gene id symbol gene type direction distance location
drd2a drd2a,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding downstream 16395 12744913 ~ 12756910 (-)
zgc:162608 zgc:162608,LOC107709131,LOC107586234,LOC107670966,LOC107717287,LOC107657244,LOC107601703 coding downstream 95472 12675658 ~ 12677833 (-)
laynb layn,laynb,LOC107709129,LOC107601717,LOC107657256,LOC107586284 coding downstream 106320 12662489 ~ 12666985 (-)
sik2b sik2,sik2b,LOC107717286,LOC107709128,LOC107586235,LOC107601680,LOC108436519 coding downstream 112441 12627863 ~ 12660864 (-)
il4i1 LOC107586302,LOC107670951,LOC107717264,LOC107657246,LOC107601700,LOC107709125 coding downstream 175317 12592638 ~ 12597988 (-)
si:ch211-286b4.4 LOC107586279,LOC107670948,LOC107709101,LOC107657226,LOC107709100,LOC107717261,LOC107601684 coding upstream 5868 12788653 ~ 12819071 (-)
LOC122358635 NA coding upstream 36372 12819157 ~ 12822364 (-)
LOC122358636 NA coding upstream 39538 12822323 ~ 12827039 (-)
LOC122358637 NA coding upstream 44831 12827616 ~ 12831884 (-)
ccdc153 ccdc153,LOC107718291 coding upstream 439057 13221842 ~ 13226120 (-)
G106184 NA non-coding downstream 32231 12738051 ~ 12741074 (-)
G106137 LOC107657248,LOC107601702,LOC107709130,LOC107586283 non-coding downstream 100857 12672187 ~ 12672448 (-)
G106099 NA non-coding downstream 174732 12598286 ~ 12598573 (-)
G106092 NA non-coding downstream 256981 12515676 ~ 12516324 (-)
G106081 NA non-coding downstream 326259 12431911 ~ 12447046 (-)
G106211 LOC107709112 non-coding upstream 55979 12838764 ~ 12840397 (-)
G106442 NA non-coding upstream 162302 12945087 ~ 12945373 (-)
G106525 NA non-coding upstream 823399 13606184 ~ 13606897 (-)
G106541 NA non-coding upstream 884786 13667571 ~ 13669379 (-)
G106548 NA non-coding upstream 970537 13753322 ~ 13756160 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other downstream 483253 12280291 ~ 12290052 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 739711 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 917410 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 1415752 11353646 ~ 11357553 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 1431189 11326512 ~ 11342116 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other upstream 671697 13454482 ~ 13461103 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 961770 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 1095800 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 1101135 13883920 ~ 13905494 (-)
cluha cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 other upstream 1126021 13908806 ~ 13925727 (-)

Expression


Co-expression Network