RNA id: XM_043259414.1


Basic Information

Item Value
RNA id XM_043259414.1
length 2172
RNA type mRNA
GC content 0.44
exon number 7
gene id scn3b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12773305 ~ 12782785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAGTGGCTACTTAGTAAGAAAACAAAGACGGGCGTCTGTTATTCTACGGCTGCGGTAGACGACGGTTTGACGATGGAGCGTCTGTACTGCTCATGTGGGTGCAGTAGGGCACAAAGGGAACTTCCCTGTCACTGACCTCTATTTAAAAGAGCTTGTTGTGGATGCGccgaggttttttttttattcctcgcGAATTTTCTACAGGAATCATTAAGATCCACAGGTCTTTATATTCACGCGCATCACCACGGAACGGCGGCGTCCGCTTCTAGTAAAACACGTTTACGGATGACTGCTCCCCGGAAGACTCAATCTAGGACGCCGCCCTGTTGTTAGATCTCCCAGTATGTCAACAGACATGAGGCTCGTGCTGCATTTGCTATTGCTCTTCATCCTTGCTGTTCAGGAGGTCAGGCTGGTGTGTGTGGACGTGGCTTCAGACACAGATGCCACCGTAGGCAGTGCTATGAAATTAACCTGCATCTACTGCATGAAACGAGAGGAGATCTCTGCCGAGACCAAAGTGGACTGGTTCTACACCGGTTCTGCATCAGATTACAGAAGAATGCTTATCTATCAGTACAACCGTGAGCCGCAGGAGCCAAAGAACACAGAAATGTATTGGAAGGGCCGTCTGATGTGGATTGGCAGCAAGGACCTGCAGGACATCTCCATTAGCATCAAAAATGTCACCGCAAATGACTCTGGCACGTACGAATGTGAGGTGTCACGCTTCTTTGCGTTCGATTCTTTCAAGCATTCCACCACCAAGACGATCACAATTGAACTGAAGGTAAAAATGCAAGggAGTGTAGACACCACAGCGCTGTACTCAGAGATCATGATGTATGTACTGCTGGTTTTTCTCACATTTTGGTTGCTGGTGGAAATGATCTACTGCTACAGGAAGATCTCCAAATCTGAGGAACTGGCTCAGGACCCCGCGACAGACTACTTAGCCATTCCctctgaaaataaagaaaacccGGGCCCCGCTGTAACGGAATAAAAGTCTCACGCTATTACGGTACTGACGATTCTTAATAGCAAGAAGTTTAAAAATGGAGAATAGGCACTGATCTTGTTCTGACCCTCAAAGAGCTGCTCTGAGAAACAAGGAAAGCTGCCAAATCAAATCCCTCTCGTCTTGATAATGTGATGTGTGGAACAAACCCTTGACTGGTTCATTATCTCCCGCTGTCTCGGTGGAGGTCAGCAGTAACACACGTCTAATCTCAGACCGATGAGGATCTGTATGTGTCTGCCCTCAACTTTTGCCTTAGTAGAGACACATACAGCAGCCCGGAGCTGAAGAGCTATCATACTGCCTATACACGCACTTTTCTTAATCAAACGTCAATCATTACCGTCACAACGCCTGTGTGAGCCTTTCCCTCTTTGGTATACGCTCTTCTTACTCTTTTGATAGAAATAGATGAAGATAAGTCTGGATTCCGATTAGACTTGGtttttattgctgtattttcTATAGAAATCCTACTGTCGTATTTTGgggttttattgctttttatttaaaaacaacaaactccGCTTTGTAACTTTGCAATCAATCATCAGTCAAAACGGTGGCAGGTAAATGGCTGCCGTGAGGAGTGTGATTGAACACACTTGtcatttgtgtttacattggTCACAGCGGCATTAAAGCAACTTCTTGGGATTGACACTAGCACTAGTCTGAACGGcgtaattattacattattccATCAATGGCGGTTTGTACCGAAGCCACATCGCCTATCCTGTTGTTATTGTTGAGTGACGTTCAGCAGCGGCAGAAATCTGTATACGGTAAAAACTCGCTTGACAATTCTACACATTCATTTCAGACTGACTGTGAACAGTCGTTTAAACCAGTAACGCAATCTCTTCAGCTGTcctaaataactgtttttatttacttttttcactGTTGCTATAATGAATTTATAGATTTGGATTtctcatgttttatttctatCGGTGCCGGCTTGCCACTGTTAACTTTGCCTTTTGCatcgttatatatatatatatatatatatatatatatatatatatatataggtcacCATAGAAACACAGCGCTTGCTCTGCCCTGTTATAATGGAGCTGCTCATCACTTGTCAGAggttgtcatgtttattaaacCAGGTGATGCATTCCAAAA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0017080 sodium channel regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156875 lncRNA downstream 32231 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 100857 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 174732 12598286 ~ 12598573 (-) True G106099
TU156737 lncRNA downstream 256981 12515676 ~ 12516324 (-) True G106092
TU156725 lncRNA downstream 326259 12431911 ~ 12447046 (-) True G106081
TU156916 lncRNA upstream 55981 12838764 ~ 12840397 (-) True G106211
TU157252 lncRNA upstream 162304 12945087 ~ 12945373 (-) True G106442
TU157380 lncRNA upstream 823401 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 884788 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 884788 13667571 ~ 13669225 (-) False G106541
XM_043258255.1 mRNA downstream 16395 12744913 ~ 12756910 (-) True drd2a
XM_043259431.1 mRNA downstream 95472 12675658 ~ 12677833 (-) True zgc:162608
XM_043259430.1 mRNA downstream 106320 12662489 ~ 12666985 (-) False laynb
XM_043259429.1 mRNA downstream 106320 12662489 ~ 12666985 (-) True laynb
XM_043258164.1 mRNA downstream 112441 12627863 ~ 12660864 (-) True sik2b
XM_043258512.1 mRNA upstream 5870 12788653 ~ 12819071 (-) True si:ch211-286b4.4
XM_043258513.1 mRNA upstream 36374 12819157 ~ 12822364 (-) True LOC122358635
XM_043258514.1 mRNA upstream 39540 12822323 ~ 12827039 (-) True LOC122358636
XM_043258515.1 mRNA upstream 44833 12827616 ~ 12831884 (-) True LOC122358637
XM_043259897.1 mRNA upstream 439059 13221842 ~ 13226120 (-) True ccdc153
TU156053 other downstream 1267128 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 1415757 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 1441407 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 1468743 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1680592 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 673198 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 964253 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1095802 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1101137 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1137286 13920069 ~ 13925707 (-) False cluha

Expression Profile