RNA id: XM_043258515.1


Basic Information

Item Value
RNA id XM_043258515.1
length 1937
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC122358637
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12827616 ~ 12831884 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttcttttcttttacttcTGCATCACATGGACTGGCTTTAGACAGAGATGGAATGTATTTGTATCAGGTAGGTGCTATCAGCACGAAATGAAATTCATTAGAGAgcgttaaataaatgaaattttgttACTGACTGAATATTGGTCAATGACAAAGTGGGCTTATTGATAACTGTAGCAGTTAGTAATTTATTGTTCAATATTTTGATGCAGGAGGTGACATGAGGCCTGAAGGTTCAGAGTATTTAATCTTCTGTAATCAGACTCAAATATCATGCCCAGAGGGAACCTACTTTTCATCAGGGATTTGTCTTGAGTGTCCTGCGGGGAAGTTCTGTCCTGGTAATGTGTCTGCACCCAGAAAATGTCCCACTGGCATGTTTAACCCTTATACTGGGAAAAGCAGTATCCAGGACTGCCAGCCCTGTGTCCCAGGTTTGGTAAGCACAGAAGACCGTGTGGAATGCAAGCTTTGTCCCGCTGGTTTCTCTTGTGACAGCGTATCAGGCAACCTCACAGCGTGTCTGTCAGGACAGTATTCACCAGAGGGATTCACCCAGTGTCTGCCGTGTCcctttggctttgtttgcattGAGGGTTTTCAAATGAAGTGTGGCCTCGGAGAAGAACCAAACTTAAACCAGACGGAGTGCGTTGAGTGTGCTGAAGGCTACTATTCCACTCTGTGCAGTGCTCAATGTCAGCTGTGTCCTGCAGGAAGCCACTGTCCGTACAAAAAGATGTCTGCACCTCTTCCTTGTCCTGCGGGCCATTATTCAGACATACTGGGCCAGACTGAGTGTAAAAAATGCAATGGTTCATCAGCCTGCAGGAGTACAGTGACTCCGACCTGGTCAAGGGGACAGTTTCATCTTGGGCAGAGGTCAAGACAGCTTATCTCCTGTCCCCCTGGGACATACCGAGACGGAGAGAGATCGGACTGTGTTGTGTGTCCTGCAGgGCATTACTGTGTTGCAAATATCGCAATACAATGCCCATCAGGAACATATGGACCAAAGGAAGGGctacaaagagaaagagactgtGCTATCTGTCCTGCAGGTTTTTACTGTTTGGAGGGCACGTCTCGGAGGCCCAGCTCTCAGTTTCTGTGCCCACAAGGGTATTACTGTGAGGAAGGCACGGGTGTGCCGCACGGGTCACCTTGCCCTGCTGGAACTGCAGGAGGACAATTGGGTCAGACAAGTAGAGCAGCTTGCAAGAGATGTGCAGAGGGTCGCTTCTGTCCCACAGGTTCTGCGGGTCCTGGCTTGCTTTGTGCCCGTGGAAGGTACTGTCCAGCAGGCACGCTCAGTGAGATCTTATGTCCTCAAGGGACCTTCACCCCACATCAGGGGGCACTgaGTGTAAAAGACTGTTTAAAGTGTCCACCAGGCTTCTACTGTCCAGAAGGAACAAGTGACCCAATGCCTTGTCAGCCAGGCACCTTTAACCCCCTAGAGGGGCAGGATGCGCTGGCAGACTGCAGGCCTTGTTACCCAGGCAAAGCATGCACACAAGTTGCCCTGAAGTTTCCTGATGTGGATTGTATGCCAGGGTTTGTGTGTCCGCCAGGTTCTGCCAGACCAAATGACCCATCCAACGCTTGCTCTCCTGGCACCCTTAGTAACCGCACAGACCTCACCGACCTCTCCCAGTGTCAGCAGTGTCCTGCGCGTTATGCCTGTCTTCGAGGCACTGGTGGAATCCAGAGGCCTCCGCTTTTTTGCTTTCCTGGACATTACTGCCCTGTGGGCACTATGTTCCCCACTCAGCACAAGTGTCCAGCTGGTACCTGGAGCGATCGCAGTGGATTGGAGTCGGAGCGTGAGTGCCGGCCATGCACGAAAGGCTGGTATTGTTTAGCAGGAGTGGGCGCTCCCTCTGGGAGATGCAACTCGGGACACTACTGCCCTGAAGGTAGTGATGCTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156875 lncRNA downstream 86542 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 155168 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 229043 12598286 ~ 12598573 (-) True G106099
TU156737 lncRNA downstream 311292 12515676 ~ 12516324 (-) True G106092
TU156725 lncRNA downstream 380570 12431911 ~ 12447046 (-) True G106081
TU156916 lncRNA upstream 6880 12838764 ~ 12840397 (-) True G106211
TU157252 lncRNA upstream 113203 12945087 ~ 12945373 (-) True G106442
TU157380 lncRNA upstream 774300 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 835687 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 835687 13667571 ~ 13669225 (-) False G106541
XM_043258514.1 mRNA downstream 577 12822323 ~ 12827039 (-) True LOC122358636
XM_043258513.1 mRNA downstream 5252 12819157 ~ 12822364 (-) True LOC122358635
XM_043258512.1 mRNA downstream 8545 12788653 ~ 12819071 (-) True si:ch211-286b4.4
XM_043259416.1 mRNA downstream 44831 12778236 ~ 12782785 (-) True scn3b
XM_043259417.1 mRNA downstream 44831 12778237 ~ 12782785 (-) False scn3b
XM_043259897.1 mRNA upstream 389958 13221842 ~ 13226120 (-) True ccdc153
XM_043259896.1 mRNA upstream 422424 13254308 ~ 13282231 (-) False mcamb
XM_043259893.1 mRNA upstream 422424 13254308 ~ 13282231 (-) False mcamb
XM_043259894.1 mRNA upstream 422424 13254308 ~ 13282231 (-) False mcamb
XM_043259892.1 mRNA upstream 422424 13254308 ~ 13282231 (-) True mcamb
TU156053 other downstream 1321439 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 1470068 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 1495718 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 1523054 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1734903 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 624097 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 915152 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1046701 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1052036 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1088185 13920069 ~ 13925707 (-) False cluha

Expression Profile