RNA id: XM_043259897.1


Basic Information

Item Value
RNA id XM_043259897.1
length 2320
RNA type mRNA
GC content 0.41
exon number 6
gene id ccdc153
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13221842 ~ 13226120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaacgaaaacaAAGAAATACTGGAAAGTTTCAACGCCTGTGTGTTGTGTCAAAGTGACGAACAAGAAAAGCTGAATCGGTTCTTTGAGGGCAGCTGTTCGAAAGAATCGATTCGCTAAAACGAATCGGACTTCCCATCATTACTTTTGCAACGGGAAGTTCAGGCTGAGCAAGTCAAGAGCCCTTGCAAGCAAAAAGCAAGGGGAAAGGCCATCACTTACGTTTATTAGATTGTCTTTCTTCATATAAAACGCAATATTATATCGccatcacatttaaaaatataataaataaaccagtTAGGAAAATTAACACCGCCTTCGACCTCCCCCTCCCATGCTCGTGCGATTGCGCTTCCTGTTCCGCCTGTAAGACCTCGCCCTCTTTCGTGTCTCACATTTTCTCCGCCTGATTTTGTCCGAATCCTACTATGGTGAAAAGCACgactaatgaatattaaattggGCGCGTAACCGGAGCACCAGGAAGGTTACTAAGCAACGCAAGCGTAGTTAATATTCATGAGAATTTGTGGACGTAGCGTACTTCCGCCGCCCTCTGAGTTAAAGAATTcattatgcagattttttttgtgaccGGTATAATATCGTGTATAATATACGGTGCTTTATTCGCTGATCATTTCTCATCATTTCATATgcgaaaaaaaaactgaaagaaaagtaaaaacatgtGAATGAGAGTTGCCTCTACAGGGCTCCGCGTCCTATACtccaaaatgaaatatagagACACCCTTTAAAGAATCTAAGCAATTCAGAAACAGCTCAAAAGACTTTATTGTCCATAAAACTAAACGACGCGCTTAGCAACTATACAAACTTCCAGGCAACGAGCAAATGCAATGCGGATACTTAGAGCGAGCGTAATTGGCATTCTGGAGAGCTGATTGGCTAACGCCTCTCTCTAACCCCGCCCACGCTACCAGGCTGCTTTGTATAAACAATACTGAAAGTTCAGTTCGAAACGTGCAGATTCAGAACCTTTCACACCATGCCAccaaaaaagaaagggaaaggaaacagcaaaaaggaaaagtccaaaaaGAGCACACCAGAAAAAGACGATGGACTTGCAGAGAAGTATCGGAGAAGTGCCTTAGACGTGgctgttttaaaagaacatcTCGCTCTGAGGACCAGTATAACTCATCAGGCCACAGCAGTGAGAGATGACTTGAAAAGTCAAATCAGAGATCTGGAGCAGGTGCTCAGTCAGGAACGATCAGACATGAAGGACATCACTACAGATCTCAACCGCCAATATAAGTCCATGGAGACAGACCTGCAGACTAAAGTCAACAGGCTTGAAGTGAGTGCAGACTTGCTTGAGAAGCAGCTCGCCGAATGTCAGGTTAAATTAAAATCGGAAAGAGAGCAGCGAGAGAAGACAGAAGCAGAAAAAGACGCCATCATTTCTGACCTCCGAAGCAAACTGGACGGTATGGAGAGGGAGTGTGAGAAGATCCTGCACGGCTGTCTGGACAGTTTGCTCTCTCACCTGGCTGAGACGCGGCTGCAGTGGGAACAACAGAGCACATTTATTCACCAGGAAGTCAAGGACGCCCTCAGAGACTTCGGGATAAACCCGCTTCACCTATGAGGACGCCTCAGTTGAGCGCTgtggacaggacaggacaggagaCATCTGATCTTTGACATCTAAGCAACTGCACATGCATAAACCAGGAGTTTTTACACTTTTGCATACAGTACGAGTcagaacaacttttaaaataaatgaatagttttaattagcaaggatgcattaaaccgATGTCAGTAAAGAGATTTATACTGTTTCAAAAgagttctgttttaaataaatgctgttcttttgaactttttattcatcggTGATTCCTGAAAAACATAATATGAGcagaactgttttcaaaactgatgatttgtttttttgttgagcaccaagtcagcatattagaatgcttTCTCAATGAttatgcgacactgaagactcgagtaatggctgctgaaattcagctttgccaccaCAGACGAAATTACGTTTTATGTTTCGCtgtattttgataaaataaccATATCCTAAATAACCACAACCATATCCCCAATAaaaggcttctttcaaaaacaaaaaagctctTTGTGACTAATTGAATAATGTATATTCGTATGTTTAGTTATCACGTATATCACATTTGTCAGATGAACATTTATACCTCAGTTAAAGTTGCACAAGCTAGCACAGCACAGCTAGCAAGTTTAACTGAGGTATAAATGTTGATCtgacaacaagaaaaaaagacactcACTTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157252 lncRNA downstream 276469 12945087 ~ 12945373 (-) True G106442
TU156916 lncRNA downstream 381445 12838764 ~ 12840397 (-) True G106211
TU156875 lncRNA downstream 480768 12738051 ~ 12741074 (-) True G106184
TU156805 lncRNA downstream 549394 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 623269 12598286 ~ 12598573 (-) True G106099
TU157380 lncRNA upstream 380064 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 441451 13667571 ~ 13669225 (-) False G106541
TU157403 lncRNA upstream 441451 13667571 ~ 13669225 (-) False G106541
TU157404 lncRNA upstream 441451 13667571 ~ 13669225 (-) False G106541
TU157405 lncRNA upstream 441451 13667571 ~ 13669225 (-) False G106541
XM_043258515.1 mRNA downstream 389958 12827616 ~ 12831884 (-) True LOC122358637
XM_043258514.1 mRNA downstream 394803 12822323 ~ 12827039 (-) True LOC122358636
XM_043258513.1 mRNA downstream 399478 12819157 ~ 12822364 (-) True LOC122358635
XM_043258512.1 mRNA downstream 402771 12788653 ~ 12819071 (-) True si:ch211-286b4.4
XM_043259416.1 mRNA downstream 439057 12778236 ~ 12782785 (-) True scn3b
XM_043259896.1 mRNA upstream 28188 13254308 ~ 13282231 (-) False mcamb
XM_043259893.1 mRNA upstream 28188 13254308 ~ 13282231 (-) False mcamb
XM_043259894.1 mRNA upstream 28188 13254308 ~ 13282231 (-) False mcamb
XM_043259892.1 mRNA upstream 28188 13254308 ~ 13282231 (-) True mcamb
XM_043258183.1 mRNA upstream 68646 13294766 ~ 13298810 (-) True c1qtnf5
TU156053 other downstream 1715665 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 1864294 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 1889944 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 1917280 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 2129129 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 229861 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 520916 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 652465 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 657800 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 693949 13920069 ~ 13925707 (-) False cluha

Expression Profile