RNA id: XM_043259431.1


Basic Information

Item Value
RNA id XM_043259431.1
length 1341
RNA type mRNA
GC content 0.44
exon number 4
gene id zgc:162608
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12675658 ~ 12677833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTATCAAACTGACCCTCCACGTGGTATGTATTGACACAGATGAAGAGCGGGACAACTTCTGATAAGGGACTGCTTTAAATGTGGACCCTGAGAAGAAATTCTCATTTTCTCATCAACAGAATAACCTTcagtaattaaatatgaatctgCAGTTTGTTACCTTGGCTGTGGTCTTTGCTACCTCAACAGCATTTCCAGTCAATGACGAGATCAGTCGAGAAGCATGGAGTTTACAGAAAGACAATCAGGCTACTGACAAGAACATTTTCGCCAAAGAGTCAAATGGTATGTGGAAGAACCATGTGGTGAGCAGTGACCTTTACTCAGAAGACTCTTACAACCCCATGGCAGCCGAACTGAGACGAAAGTTGAGCATGGAGTCTGAGCGCCTGAGGGTTCGTCTGAAGCAGGAGCTTGCTGAGCTGAGGGAGAGGTTATCTCCTTACCCCAGCCACCCAAAACACACCATGGCCAATATCAAGGAGTTCCTCGCTCCCTTCACTAGGCAGCTCCAGACGGCTCTCCAGTCCAACACTCAGGAACTCTGCGAGAAACTCAATATGAACCTCCAGGACCTGAACCCAGAGGAAGCCACACTCTACCAGGAGGCAGTGCAGAGGATCACGCTAGCTCTGGATGAAAGCCACCAGAAAAGGACAGCAGCCTTTGAGGACTTTAAAACCAAAGCATTTGAGGCCGTAGAGGAAGAACGAGACAGCAGCGGAAAAGAGCTTTGGGAGGAAGTCACTGCCAGGCTGGGACAGGAAGTGTGTACCTTCAGTTTAGAGGTACAAGGCAAGGTGGCGGCACTCAAGATAGCTTTGGCAGGCCATCTCGCCTCGGCTCAGCCTCCAAGGGATGTGATGAATTCAAAAGTTGATCAGTTCTGCCAGAATTCCTCAGCTCGTAATCAACAGTTTATTTCTAACTTAGACCAACAGATGATCGCTCTACAAGAAAACCAGGGCCATGGTGAGTCAGCTGGCTTCCATCAGACAAACATAGAGTCCATACAGGAAGATTTCTCAACCAGACTCACAGCCCTATTACAAGACATCGTACACACTCTAAATTAAACGACACACCTCCAGTCCAGTcagaaatgtactgtaaataacaGCTCTTATTTTCAGATTGTATATTGAGacctgtaactttttttgtagaacaatattgttgttttgtacAGTTTTCAGAAAGAACCTTTATAAAATACAACGAAATCCAGTGAAAGACAGAAAAGCTTTCTTCCTTTTactgaagatattttgtgcAATGTGTGGATTATGTttcataaacatgtaaataaactgTTCAATTTGTACATATGTGAACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156805 lncRNA downstream 3210 12672187 ~ 12672448 (-) True G106137
TU156746 lncRNA downstream 77085 12598286 ~ 12598573 (-) True G106099
TU156737 lncRNA downstream 159334 12515676 ~ 12516324 (-) True G106092
TU156725 lncRNA downstream 228612 12431911 ~ 12447046 (-) True G106081
TU156722 lncRNA downstream 247069 12428338 ~ 12428589 (-) True G106079
TU156875 lncRNA upstream 60218 12738051 ~ 12741074 (-) True G106184
TU156916 lncRNA upstream 160931 12838764 ~ 12840397 (-) True G106211
TU157252 lncRNA upstream 267254 12945087 ~ 12945373 (-) True G106442
TU157380 lncRNA upstream 928351 13606184 ~ 13606897 (-) True G106525
TU157402 lncRNA upstream 989738 13667571 ~ 13669225 (-) False G106541
XM_043259430.1 mRNA downstream 8673 12662489 ~ 12666985 (-) False laynb
XM_043259429.1 mRNA downstream 8673 12662489 ~ 12666985 (-) True laynb
XM_043258164.1 mRNA downstream 14794 12627863 ~ 12660864 (-) True sik2b
XM_043258966.1 mRNA downstream 77670 12592638 ~ 12597988 (-) False il4i1
XM_043258967.1 mRNA downstream 77827 12592638 ~ 12597831 (-) True il4i1
XM_043258255.1 mRNA upstream 67080 12744913 ~ 12756910 (-) True drd2a
XM_043259415.1 mRNA upstream 95472 12773305 ~ 12782784 (-) False scn3b
XM_043259414.1 mRNA upstream 95472 12773305 ~ 12782783 (-) False scn3b
XM_043259416.1 mRNA upstream 100403 12778236 ~ 12782785 (-) True scn3b
XM_043259417.1 mRNA upstream 100404 12778237 ~ 12782785 (-) False scn3b
TU156053 other downstream 1169481 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 1318110 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 1343760 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 1371096 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1582945 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 778148 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1069203 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1200752 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1206087 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1242236 13920069 ~ 13925707 (-) False cluha

Expression Profile