LOC122329618


Basic Information

Item Value
gene id LOC122329618
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5290545 ~ 5294460 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225966.1
CACATGCATCCTGGTTTTATTAGATCGATTCTCAAAGTTTTCACATCTTTTGCCCCCCAAGGGTTTACTGACTGCCTTGGAGACAGCAGACCTGCTCTTCAACCACATCTTCAAATATTACGGCATTCCCGAAGACATTGTCTCAGACCGAGGCCTACAATTCTTCTCCACTTTTTTATGCTTCTAGGTGTGATTGTCAGCCTCACCTCACATCATCCACAggctgacagacagacagagaggaggaTATAAGAGATATAAGAGATTTCCTGCGAACCTTCTGCCATGGCCACCAGTTTCTGGGCTGGGCAGAGTACACTCAGGTTGCACTGGACTCACTCCCTTCCAGTGCATACTTGGTTACCAGTCCACACTATTCCTCTAGTCTGGGGAACCATCTGATGTCCACCCAGCTGAGACCCCCCATATATCAGCTGGGTCAAAAGGTTTGACTGTCGACAAGACACAGAGGCTGCCGAGGTTCCTCATTCCTAGTCCTGGACAGTTACTTTTCCACACAGTTTAGTTagctctaattaaacacacctgaatcaaCTAGTCTTGgtctttgcatattttttaaaaatggccaGGTATGTCATAAATGTAATCTCAGCAGCCATTTTGCTGTTCAGGAGAAACTTGCTTTACTGACTCTGAGACACGCCTGTTTTACACACGACACAAACACAGAACCAGGAAACAGGAGTCcataaaactgaaagtgaaagtgTAGTCGAGCTGTCGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGAAGCTAGATTTTCTCAGGATGAGTTCACTTGTCCAGTGTGTCTGGATCTCCTGATGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGGCTGCTGGGATCAGGAGGATGAGAAGAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGACCCGCTTTATCTAGAAACACCTTGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTTTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGTGAGAATCACCTTCAACAACATGAGAGTTGGTTTAAAGGAAAGAGACACAATCTGACCGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACAAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCACGACACTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGAATCAGCTGAAGGAGACTCAGAAGACGCTCCAGCAGAGAGtccagcagagagagaaagatctcCAGCGGCTGAGAGAGACTGTGGAGTCTCATAAGCGCTCTGCACAGACAGCAGTGGAGGACAGCGAGAAGATCTTTACTGAGATCATCTGCTCCATTGAGAGAAGACGCTCTGAGCTGATACGACTGATCAGAGATCAGGAAAAGCAAGCAGTGAGTCGAGCTGAAGGACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAAAAGAGACGCTGAGCTGGagcagctttcacacacacaggatcacATCCAGTTCCTGCAGAGTTTCCAATCTCTATCAGCATCTTCTGAATCTCCAGACATAAATGATGTCACCTTCAGTTCTCTTGTCATTTTTGATGACCTGAAAGAATCGGTCCATCGCCTGAGAGACAAACTGGACGATTTCTGCAAAGAGGAGCTGAAGATCTTAGACAGAGAAACATTCCCCTGCATTGGTTTTTGGACGAGGAACGACTTCCGACAATATTCCCATCAGCTCActctggatccaaacacagtaAATAAACTACTCCGTCTGTCTGAGAGCAACAGAGTGATTGCTAACACTGACACCGTTCAGtcatatcctgatcatccagacagatttagTTATTGGcctcaggtgttgtgtagagagagtgtgtgtggacgctgttatTGGGAGCTGGAGTGGACTGGAGATCGAGGTCTGGATATATCAGTGGCATATAAGAGCATCATCAGGACGGGAGAAAGATTAGAGTTTGCATTTGGATTCAAtaatcagtcctggagtttgtaCTGCACTCCCTCCAGATATACATTCAAACACAATAACATAAAGACAGATCTCTCTGTAAAGTCCATCAGCAGGAGAATAGGAGTGTTTGTGGATCACAgagcaggaactctgtccttctacagcgtctcgGACACAATGAacctcatccacacagtccagaccacattcactcagacactctATCCTGGGTTCGgtgtttataataaatcatcattaaaactttgttgatgaatcagaaCAGATTGACGAGAGATTCTACCGATAATGATGTTATAGAGTATCTTCTTTTATCTTCATTGCATTAATACTGCAGCTGAACATCTGTAACTGAAATAACGTGCTAGAATAAATGTGTGAATTAAATCCTCATATAGACAGTAAGatcagtgtgtatgtgttttcttAGCCTTTATTTGTTCATTGAGTTCAGTGTAGTATCAAATcaatcatgttttattattactatcaaaatttaattcaaacaaTAACACATCAATAAATCATTATTCACCTCA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225966.1 True 2691 mRNA 0.44 7 5290545 5294460

Neighbor

gene id symbol gene type direction distance location
LOC122329621 NA coding downstream 3383 5282175 ~ 5287162 (-)
acvr2ba acvr2b,LOC107687130,LOC108436077,LOC100136506 coding downstream 17749 5238446 ~ 5272796 (-)
LOC122329444 exog coding downstream 60760 5218442 ~ 5229785 (-)
wdr48a wdr48,LOC107753054 coding downstream 354721 4920284 ~ 4935824 (-)
slc22a17 slc22a17,LOC107676813,LOC107686828,LOC107554358,LOC107713358 coding downstream 398332 4878308 ~ 4892213 (-)
LOC122329619 LOC107557625,LOC107756192,LOC107557627,LOC107573470,LOC107717306,LOC107571437 coding upstream 201 5294661 ~ 5303028 (-)
xylb xylb coding upstream 16530 5310990 ~ 5347205 (-)
crygn2 crygn2,crygn,LOC107744746,LOC107566923,LOC107653877 coding upstream 68429 5362889 ~ 5366112 (-)
ptprma ptprm,LOC108432749,LOC108271270,LOC106579657 coding upstream 133121 5427581 ~ 5604993 (-)
lrrc30a lrrc30,lrrc30a,LOC107562767,LOC107566924,LOC107743992,LOC107579084,LOC107566920 coding upstream 319351 5613811 ~ 5615968 (-)
LOC122329622 NA non-coding downstream 12725 5274956 ~ 5277820 (-)
G161026 NA non-coding downstream 54724 5234921 ~ 5235821 (-)
G161024 NA non-coding downstream 55817 5232587 ~ 5234728 (-)
G161030 NA non-coding downstream 90557 5198658 ~ 5199988 (-)
G161029 NA non-coding downstream 92292 5196576 ~ 5198253 (-)
LOC122329809 NA non-coding upstream 13292 5307752 ~ 5370370 (-)
G161045 NA non-coding upstream 15521 5309981 ~ 5310500 (-)
G161035 NA non-coding upstream 24481 5318941 ~ 5363465 (-)
G161052 NA non-coding upstream 62094 5356554 ~ 5393720 (-)
G161064 NA non-coding upstream 392757 5687217 ~ 5735130 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 123 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 377043 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 459818 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 461290 4827249 ~ 4829255 (-)
G160933 NA other downstream 491548 4679859 ~ 4798997 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other upstream 77695 5372155 ~ 5423068 (-)
G161139 NA other upstream 701641 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 769139 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 806284 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 1101711 6396171 ~ 6470101 (-)

Expression


Co-expression Network