LOC122329619 (LOC107557625,LOC107756192,LOC107557627,LOC107573470,LOC107717306,LOC107571437)


Basic Information

Item Value
gene id LOC122329619
gene name LOC107557625,LOC107756192,LOC107557627,LOC107573470,LOC107717306,LOC107571437
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5294661 ~ 5303028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225967.1
CCTATCGATCACATCCAGGCCTGATGAAACTGCTTTTGTCAATGCGAACGCGCACAAATCGTTCCTCACGGCTCGATGCTGATGAGTTTGTGCACTAATGAGGGATCGCCTTGAGTTGATGTTGCTTTCTGTCAGTAACGGGTCTGACTGATGTCGGCGTTTTATAAACTGTTGAGCTGGACAGGAAGAGAACAGAACAGGTTCCTGAAGAGTGAAGCAGGTTATAAATCAGACTCTCCTTCCCTGGATCTGTTCGGTCAAACATCTGGCTTCTGACAGTCATCCTTTAGAAAACAGATCCAACTGTGAATCAGGACACAGTTTTCAGCGTGGTGATAAAGTTACAGCATTACTGCAGTCTTTAAAGTTGCTGTCCTGCATCTCTGGAGCTTCTATTCTTTGTGTGTTTGCCGAGACTGACATCCAGTAAACGTTTGTAGACTCACGGACACGGCTGCGTTACGCACGTGACCCAAACCAGGAAATAAGAAACAGAAATCACATGAGTTCAGGGAAACAGAAACTGAAAGTGTAGTCGAGCTGTTGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGGAGTCAGATTTTCTCAGAATTACTTCAAGTGTCCGGTGTGTCAGGATCTCCTGAAGGATCCGGTGACTACTCCATGTGGACACAATTACTGTAAGAGCTGTATTACAGGCTTCTGGAATGATGAAGATCAGAATAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTATCTAGAAACACCAAGCTGGCTGAACTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATGCAAAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGTGAGAATCACCTTCAACAACATGAGAGTTGGTTTAAAGGAAAGAGACACAATCTGACCGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACGAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCATGACATTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGAATCAGCTGAAGGAGACTCAGAAGACGCTCCAGCAGAGAAtccagcagagagagaaagatctcCAGCGGCTGAGAGAGACTGTGGAGTCTCATAAGCGCTCTGCACAGACAGCAGTGGAGGACAGCGAGAAGATCTTTACTGAGATCATCTGCTCCATTGAGAGAAGACGCTCTGAGCTGATACGACTGATCAGAGATCAGGAAAAGCAAGCAGTGAGTCGAGCTGAAGGACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGAAGAGACGCTGAGCTGGagcagctttcacacacacaggatcacATCCAGTTCCTGCAGtcTGTATCAGCACCTCCACAATCTACAGACATAAATTACGATTCCTTCAGTTCTCACATCTCTTTTGATGGCCTGAGAGAATCTGTCTATCAGCTAAGAGACCAACTTGAGGATTTCTGCAAAGAGCAGCTTAAGAAGATCCCAGACACAGTCTCACTCACCAACATTGTTCTCTGGACAAGGAACAACTTCCTACAATATTCCCATCAGCTATCTCTGGATCCGAACGCAGCATATAGacgtctctgtctgtctgagaaCAACAGAGTGATTGCTAACACTGGCAAAGTCCAgccgtatcctgatcatccagacagatttgatggtatgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagctGGAGTGGAGTGGATGTGTGAGTTTATCAGTGTCCTATAAGAGCATCAGCAGGAAGGGATCAGGTAATGAGTGTTGGTTTGGATccaatgatcagtcctggagtttgacCTGCTCTTCCTCAGGTTACTCTTTTGGATTCAATAAGATATGGACCGATCTCCCTGTGAAGTCCATCAGCAGTAGAATAGGAGTGTTTGTGAATCACAgtgcaggaactctgtccttctacagcatCTCGGACACAATGAacctcatccacacagtccagaccacattcactcagacactctATCCTGGGTTCGGTGTTTATAAAgaatcatcagtgaaactgtgcTGGTGAATCAGAATCGACTGATGAAAAATTCTATCCATAATGCTTTGATCTTTATGATGAATCGGTGAAAGTAAGATGTTATAGAGTATCTTTTTTCTCTTCATGATATTAATACCGCAGCTTAAATTAAGTGTATATTAGTTAGTTCTGGCAAATCACGCAAATCAAGCTTTCATCAGCTGACTCTCTTCTATAGTCagaagaaactaaaaaaaagctttttggcAGCAAAGCCACCAGATGGGTTTCGTACAAACAGGGATAAAAAGTACCCCATGTCCAAGGTTAAATATACTCTTGGATCTTTAATGTTGATGGTCTTTTGGTCCTGGTGGTATCGTTCAGATGCATGGCGGCATGCATTCTCTTAAATACCAACagataaaaaatattagaagtcTATTAGAAGTCTTATAATGGACCATGGTTGGATCTTTCATTGGGACAATAATccaaagcaaacacaaaaataggtCTCTGAgcacaaaaatgtttgaaaaggaTGTTTCAATAATTGAGCGCCAGTAATTGTGGCCAATATGAACtagagaaagcatttatttcataatgatatttccccCCACTTTCATCTGTTTTACTTCAATGGTAGGTTagaattttgtgatttttaaaataaacagtgcagatttattttcagagccacctttgctcatatttaccaagggtgccaacaTTAGTGGAGGGCAGTGTATGTTGGCAAATATGCTATCGTCAAATATTGCTCATTGCTTAAGACTATAGCTGCtctgtaaaatgtttgtttgctaTGAGGTGCTTGTATGCTGACGACATTAACCAGTTAAACACACCACAGTGAGGCttgattttaaatctgtttttaaagctGTCTGATATGAAGCAGGCTTGCTGCTCAAGGCTCATCTAGTATTGGGAATTTGGTTTCATTACATTTGTATCCTAATACTGTTTCAAAGTCAATAATCAGTCATATGCTGTTGCTTAAAGCTATTTAGTGCATCCTTGACATGCTTGATATTTATTGTGTAGTATATAGACTTTGTTACTAAAGGTTTTTATTCATGCTAAGGATTATCTGGATAAGGGCACCATGTTTTCAGGTATTGACTGAATTAAAGGTGCATGCTACTCTTCTCAGCTGCTTATTAAAGAAGAGCCCCCCTTTGATGTTCTTCGCTAAACCCAGAGTTTTTTTCAGTCTCCTCCCCTTTTTTCAGCATAAGCGATGTTTAAATAGCTTATTAATGCATGCATGCTGCAAAAGTGCTTTTGTTGCTGAGAAGTTTTGCCTTATTtcaagtataaatatttaaaactataacGTTCAGGTACATTTtctttagattacattttttgttttaaagtgcaaACACGTAGAATTGtcagaaaagaaaagtaatCCTAATGCAAACGGAAACGAGAATATTTTATAAGATTTAATTTCTTACCCTATCGGCAGATAAAGTCTTGCTTTAAGATAAAGATTTGCTTTAGGGAAAATCTGAGAAAAATACGCTTCAtgaaaacaagaataaataccttatgttatttttataatttttttttgccatattcacatgtatatttatttgttcacaatTTATATGgtcatatatatttcttataaatacaaaattaaaagcatCCTTTGATCTTCACATGCAAATTGTGTGTctttatgtctgtttttatatctataatcatttatattcataattttcattcatatgatttattatttgataactgttattatttcatcaatatttgatcatttatcaatatatttttgaagGAAAATTATTTCAAAGTAAATCCTACACCAATTGAgtgatattattataatacaagGTTCTAAAGATAACCCAAACGTAAGATCACTTTTTTCAAGCTTGACAGTGAATTTAAAGCTTCATGGAAATgctcaaacaaatgcatttttttactttctgtgaatcctaaaaaactaaatttaacctggtttccacaaaaatatcgGGCGGCACAACTTttcagttttcaacattgataataatcagaaatgtttgttaagcagtaaatcagtatgttattatgattttttaaagatcacgtgacactgatgatgaagtaatgatgctgaaaattcagagcTTCAGAGTTTTCAACATATATTAATCTAGAAAAAGCtatatgaaattgtatttttgctgtatttttgat
>XM_043225968.1
GATGCCTATCGATCACATCCAGGCCTGATGAAACTGCTTTTGTCAATGCGAACGCGCACAAATCGTTCCTCACGGCTCGATGCTGATGAGTTTGTGCACTAATGAGGGATCGCCTTGAGTTGATGTTGCTTTCTGTCAGTAACGGGTCTGACTGATGTCGGCGTTTTATAAACTGTTGAGCTGGACAGGAAGAGAACAGAACAGGTTCCTGAAGAGTGAAGCAGGTTATAAATCAGACTCTCCTTCCCTGGATCTGTTCGGTCAAACATCTGGCTTCTGACAGTCATCCTTTAGAAAACAGATCCAACTGTGAATCAGGACACAGTTTTCAGCGTGGTGATAAAGTTACAGCATTACTGCAGTCTTTAAAGTTGCTGTCCTGCATCTCTGGAGCTTCTATTCTTTGTGTGTTTGCCGAGACTGACATCCAGTAAACGTTTGTAGACTCACGGACACGGCTGCGTTACGCACGTGACCCAAACCAGGAAATAAGAAACAGAAATCACATGAGTTCAGGGAAACAGAAACTGAAAGTGTAGTCGAGCTGTTGTGAGTTTGTGTCTCTGTATTCATGCAGTAAAATGGCAGGAGTCAGATTTTCTCAGAATTACTTCAAGTGTCCGGTGTGTCAGGATCTCCTGAAGGATCCGGTGACTACTCCATGTGGACACAATTACTGTAAGAGCTGTATTACAGGCTTCTGGAATGATGAAGATCAGAATAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTATCTAGAAACACCAAGCTGGCTGAACTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGCTGACTGTGACGCTGGAGCTGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATGCAAAGCCGTCAAGTCCTGTCTGATGTGTCTGGAGTCTTACTGTGAGAATCACCTTCAACAACATGAGAGTTGGTTTAAAGGAAAGAGACACAATCTGACCGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACGAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAgaagtgtatatgtgtgctgtgtacgATGGATGAACATAAAAACCATGACATTGTATCAGCAGCAGACCAGAGGACAGAGAAACAGAATCAGCTGAAGGAGACTCAGAAGACGCTCCAGCAGAGAAtccagcagagagagaaagatctcCAGCGGCTGAGAGAGACTGTGGAGTCTCATAAGCGCTCTGCACAGACAGCAGTGGAGGACAGCGAGAAGATCTTTACTGAGATCATCTGCTCCATTGAGAGAAGACGCTCTGAGCTGATACGACTGATCAGAGATCAGGAAAAGCAAGCAGTGAGTCGAGCTGAAGGACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGAAGAGACGCTGAGCTGGagcagctttcacacacacaggatcacATCCAGTTCCTGCAGtcTGTATCAGCACCTCCACAATCTACAGACATAAATTACGATTCCTTCAGTTCTCACATCTCTTTTGATGGCCTGAGAGAATCTGTCTATCAGCTAAGAGACCAACTTGAGGATTTCTGCAAAGAGCAGCTTAAGAAGATCCCAGACACAGTCTCACTCACCAACATTGTTCTCTGGACAAGGAACAACTTCCTACAATATTCCCATCAGCTATCTCTGGATCCGAACGCAGCATATAGacgtctctgtctgtctgagaaCAACAGAGTGATTGCTAACACTGGCAAAGTCCAgccgtatcctgatcatccagacagatttgatgTATCAGGCCTAATTTACTCGGCAGGAAATTTAAGCATTGGACAAGTTCACTCCAAGGAGATTCATCTGCTTGTTCTGGAGGGGTTGAATGCTGACATTATTCTAGAGCACCCATGGTTGGTAAACGTAATCCCATCCTCTCCTGGCATTCGGGTGAGGTCCTGAAGTTGGGCAAGGACTGTTTCCCTGGCTGTTTCCTATTTTCTCAGTGGAGAAGAGATTAGTCAACATATCCACCAGTTATGCCCTCTTCAGCAATGTATTCTGACCAAAGAAAGCCTCCTAATTACCACCACA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225967.1 True 4396 mRNA 0.39 6 5295562 5303024
XM_043225968.1 False 2105 mRNA 0.46 7 5294661 5303028

Neighbor

gene id symbol gene type direction distance location
LOC122329618 NA coding downstream 201 5290545 ~ 5294460 (-)
LOC122329621 NA coding downstream 7499 5282175 ~ 5287162 (-)
acvr2ba acvr2b,LOC107687130,LOC108436077,LOC100136506 coding downstream 21865 5238446 ~ 5272796 (-)
LOC122329444 exog coding downstream 64876 5218442 ~ 5229785 (-)
wdr48a wdr48,LOC107753054 coding downstream 358837 4920284 ~ 4935824 (-)
xylb xylb coding upstream 7962 5310990 ~ 5347205 (-)
crygn2 crygn2,crygn,LOC107744746,LOC107566923,LOC107653877 coding upstream 59861 5362889 ~ 5366112 (-)
ptprma ptprm,LOC108432749,LOC108271270,LOC106579657 coding upstream 124553 5427581 ~ 5604993 (-)
lrrc30a lrrc30,lrrc30a,LOC107562767,LOC107566924,LOC107743992,LOC107579084,LOC107566920 coding upstream 310783 5613811 ~ 5615968 (-)
arhgap28 LOC107747481,LOC107653873,LOC107698695,LOC107559389,LOC107728987,LOC107570873 coding upstream 368351 5671379 ~ 5692871 (-)
LOC122329622 NA non-coding downstream 16841 5274956 ~ 5277820 (-)
G161026 NA non-coding downstream 58840 5234921 ~ 5235821 (-)
G161024 NA non-coding downstream 59933 5232587 ~ 5234728 (-)
G161030 NA non-coding downstream 94673 5198658 ~ 5199988 (-)
G161029 NA non-coding downstream 96408 5196576 ~ 5198253 (-)
LOC122329809 NA non-coding upstream 4724 5307752 ~ 5370370 (-)
G161045 NA non-coding upstream 6953 5309981 ~ 5310500 (-)
G161035 NA non-coding upstream 15913 5318941 ~ 5363465 (-)
G161052 NA non-coding upstream 53526 5356554 ~ 5393720 (-)
G161064 NA non-coding upstream 384189 5687217 ~ 5735130 (-)
LOC122329620 LOC107711609,LOC107569850,LOC107554368,LOC107560358,LOC107568663 other downstream 4239 5287164 ~ 5290422 (-)
ttc21a LOC107713329,LOC107554359 other downstream 381159 4897012 ~ 4913502 (-)
LOC122329978 LOC106514910,LOC102208621,LOC108261464,LOC105941235,LOC108229141,LOC107687159,LOC108436088,LOC108436074 other downstream 463934 4829539 ~ 4830727 (-)
G160938 smyhc2,LOC107687159,LOC108271487,LOC108436074,LOC108436088 other downstream 465406 4827249 ~ 4829255 (-)
G160937 smyhc2,smyhc1,LOC107560368 other downstream 587690 4706440 ~ 4706971 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other upstream 69127 5372155 ~ 5423068 (-)
G161139 NA other upstream 693073 5996101 ~ 5996690 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other upstream 760571 6063599 ~ 6086816 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other upstream 797716 6100744 ~ 6120917 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other upstream 1093143 6396171 ~ 6470101 (-)

Expression


Co-expression Network