lsp1a (LOC107758754,LOC107549254,LOC107675454)


Basic Information

Item Value
gene id lsp1a
gene name LOC107758754,LOC107549254,LOC107675454
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 15674184 ~ 15697503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228361.1
AGTGTCTGAAAGCAGACCGAGTGCCGCGTGGATCTCTCCTCAAAAGCTTGAGTGTCTGAGGAAAGAGAACGTCAGCGTTTGTGAATCAGATTCCACGGAATACAAAACCCTCCAAGAATTCCAAGCTCGGAGAAGAAAGAACAATGTCAAGTGCAATCACGAGACGAAGCTCCAGCAAGCAAGGCTTGCAGAACCTTCTGAGAGTGACGGCTCAGCGAAGTATCGAAGATGCCGAGGAGATCGAGAAAAGGCGACGCCGAGCCCGGGAGGCCTTCCGCAATCAACAAAGCCTGTCTGGATCCGCCAGTTCCCCTCAGGACAGTGTAAACCCACCTGAGACCGGCCTctATGAAAGGGACTTCAAACCTAGCAGTCCGACTGCTGTGGATGAGGATGAAGGTTTTAGTGACTGGACCCAGAAGCTGGAACGGAGAACAAGGTCTAGAATGGCTGAAAACGGCAGTGGAGAACAGTTACAAcaggaggagaaagacgtgAGAGAGAGATCTAGGCAAAACGACAAAAGCTTCAACACTTCCATACAGTATCAGCAAATACAGGACAGAGAGGACGAGGAGAAAAGACCAGAGATGAGGAGGAGCGCTGAAAGACGAATGGAGATCAGTGAGAGGGTGAGCAGCCCGAAACCAGAGGAATGGCATGACGACAGCAAAAGAACAGGAAATAAACAACAGGAAATAAAACCACAGATGGAGAACAAGATTAAAGAGGAGAGGAAGGAGGTGAAGGTGTCATACATGTCGAAAGTCTTCCTACAGCAAGACAGAATGCCCAATGGCAATGGAGAGGCAGCTGcagaggaaatgacatcacatCTGGTCAGAACCAAAAGATCACCCAGCAGGACTGTAGATGCAGATCAGATCCCTGAGACTAAGAAGGATATGCAGGCTGGTCTGGAGACCGAGCTGAAGCTTGAGAAGATCAGACGTAGCCACCAGGAGAAGGAGAGCCAGGAAATGGAGCACCTACGGCAGCGTCAGGCCGAGGCTgagctggagctggaggagctgaagaagaagagagaagaacGACGCAAGGCTCGTGAAGAGGAGGATcggaagagagaggaagaggaacagCAGAAACTTGCCAAGAAAGAGGAGGACAAGAGACAGATGAAGGAGGACATTGAGAGGAGGAGGATGGAAGCAGCTGAGAAGAGAATGAAGAATCTCAACATCACACCTACAGATGGCGATGATCCATTTAACCCTCTAAACCCCATAAGTCCAACTTTCAAGATCACAGAGAGAACTGAATCCTTGAATCGATCTTTAAAGAAGAGTAACAGTTTCAAGAAGACCCAGAGACCTGTTCTTCTGCCCAAGATTGATGACAAACTGGAACAATACACTCATGCAATTGAGATCTCTTCTAAAGACGCAAAATTGACTAAGTCTGCGACAGTGGACGTGCCCGGTTTCTCTGCTCCGGTGGCCTCTAAGAAAAACCTGTTTGAAGCAGGAGAGGCCTGGAGTCAAAGCAGCCCGAAAGGATCGCCTCTGAAGGAGACAGACTGCGTGAAAGTGGGTGTATCGAACCTGATTAACCAATGGGTGAAAGGAAGTCCTGAAGGCGGGAACAGACACTCCTTCCACACCATCTGTAAGTCTATGTTCTGcagaaaaaagaagaacatgTGGGAAATTATTGGAGAATGTTCTACAGGAGAGAGGTCAGGACTGGGAGGAAAGGGCTCCTCTTCAAGTAAACGGTACAAGTTTGTTGTGACAGGCCACGGAAAATACGAGAAGATTTCCACTGAGGGTGATTATTACAGTGTCTACCCGAATGGAAAAACAAGTGATTTTTCCAGCGATCACTTGTGAGGAATTTCTTTCCTGATTCACCAAGAACACATTAATTGACATATATGTAGTACAATATTTCTATCAACTTTTCAAAACATATGGAAGTAACAATTAGAATGAcattgtttgtgttgttttttttatgatggttCCATTTTTGACTGTTCTAATGGCATGGCTTTGATATGTTTTTCTACAATCtatttgtcacacacacacacacatatatatatacacatgtatcaTTCTCAGAAATCTGACTGATTGCAACAGAATATAAAGTTTTAGTCTCTTTTAGTCTTCCGCAGTATCGCCTGCAGTATTTGTGCTGATATTATGCCCACTTTTAACTTCTTCTAATGTACTTCTAAAGTATGAGTATAAACTGAATGTGAATGTCAAATAGAACAAAGTCATGACTTTTGttaactgtttttatattgattatCTATGCTATTTTTATACTATGGCACATTGTTTGATTTATATAGACTTGAATAGATGAACTGTAGAATAatccaaaaacatatttcaacaTTCCTGCAGCTTattcttattcattttaagcCACAACCAATGTTTTactgtcatattttattacaaatatgacACCGA

Function

NR:

description
PREDICTED: non-muscle caldesmon-like isoform X2

GO: NA

KEGG:

id description
K14957 LSP1; lymphocyte-specific protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228361.1 True 2450 mRNA 0.44 14 15674184 15697503

Neighbor

gene id symbol gene type direction distance location
tnnt3a tnnt3a,LOC107675259,LOC107758743,LOC107549286,LOC107675470 coding downstream 3090 15666149 ~ 15671094 (-)
LOC122330908 LOC107675294,LOC107549256,LOC107675444 coding downstream 83392 15589521 ~ 15590792 (-)
LOC122330390 NA coding downstream 111503 15559868 ~ 15562681 (-)
kcnj11 kcnj11,LOC107758740,LOC107675278,LOC107549287,LOC107576152,LOC107744183,LOC107675448 coding downstream 172434 15498317 ~ 15501750 (-)
LOC122330444 LOC107758754,LOC107549254,LOC107675454 coding downstream 291461 15354142 ~ 15382723 (-)
LOC122330555 LOC107758744,LOC107549281,LOC107675255 coding upstream 12754 15710257 ~ 15712447 (-)
LOC122330556 tnni2a.3,LOC107549283,LOC107595230,LOC107742058,LOC107675302,LOC107758756,LOC107675455 coding upstream 15545 15713048 ~ 15717876 (-)
tnni2a.2 tnni2a.2,LOC107595232,LOC107549280,LOC107742055,LOC107675462,LOC108428758,LOC108275295,LOC103035007 coding upstream 19482 15716985 ~ 15728462 (-)
tnni2a.1 tnni2a.1,LOC107549279,LOC107675256,LOC107758755,LOC107742056,LOC107595231 coding upstream 31398 15728901 ~ 15732022 (-)
LOC122330550 LOC107742063,LOC107758757,LOC107675461,LOC107675297,LOC107595234,LOC107549278 coding upstream 36645 15734148 ~ 15739854 (-)
G169837 NA non-coding downstream 9293 15664085 ~ 15664891 (-)
G169811 LOC107758749,LOC107744184 non-coding downstream 125372 15494274 ~ 15548812 (-)
G169812 LOC107744184,LOC107758749,LOC107675459 non-coding downstream 180105 15489903 ~ 15494079 (-)
G169804 NA non-coding downstream 217982 15136299 ~ 15456202 (-)
G169783 NA non-coding downstream 750901 14918178 ~ 14923283 (-)
G169852 NA non-coding upstream 105448 15802951 ~ 15803612 (-)
G169908 NA non-coding upstream 363938 16061441 ~ 16065980 (-)
G169910 LOC107675266,LOC107751276,LOC107589308 non-coding upstream 366496 16063999 ~ 16064424 (-)
G169967 NA non-coding upstream 649969 16347472 ~ 16358674 (-)
LOC122331058 NA non-coding upstream 827535 16525038 ~ 16525745 (-)
ush1c ush1c,LOC107675293,LOC107549256,LOC107742065,LOC107675444 other downstream 71336 15584551 ~ 15602848 (-)
G169808 NA other downstream 90549 15248955 ~ 15583635 (-)
LOC122331105 abcc8,LOC107675473 other downstream 123381 15502621 ~ 15550803 (-)
LOC122330438 LOC107758747,LOC107744187,LOC107549291 other downstream 621260 15029101 ~ 15052924 (-)
G169631 NA other downstream 919357 14754174 ~ 14754827 (-)
syt8 LOC107595270,LOC107742052,LOC107549275,LOC107758745,LOC107675261,LOC108428822,LOC103035847 other upstream 45026 15742529 ~ 15751580 (-)
LOC122330715 LOC107572180,LOC107661100,LOC103373902,LOC101175368 other upstream 757528 16455031 ~ 16457348 (-)
G169989 LOC107600734,LOC107683095,LOC107716905 other upstream 776219 16473722 ~ 16474665 (-)
G170090 lamb1,lamb1a,LOC107703183,LOC107595246,LOC107662456,LOC107589344 other upstream 802674 16500177 ~ 16501590 (-)
LOC122331057 lamb1a,lamb1,LOC107662456,LOC107595246,LOC107703183 other upstream 839430 16536933 ~ 16565638 (-)

Expression


Co-expression Network