CI01000004_04754556_04784656 (ATR)


Basic Information

Item Value
gene id CI01000004_04754556_04784656
gene name ATR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4754556 ~ 4784757 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_04754556_04784656.mRNA
ATGGAGCAAGGACTAGAGATGTCAGCAATGATTCCTGCATTGCAAGAACTAGCCAGTGCCAGTTCAGTTGAGTACAACCAGGCTGTACAGAAACCACGTCAGATACTGTGTCAGTTCATTGACAGGATACTGACAGATGTTGATGTCGTTGCTTTGGAGTTATGTAAGAAGACCAGTTTTGAGCCAACATGTGTGATGCTGCTGGACTTTGTGCAGCACATTATTAAATCCTCTTCGTTAATGTTCATAAACCCAGCGTTTCTTCCAGATCACTTCAAAAACTCAGAGAACAGCTGCACTGATTTCAGTAAATGGATCATCAACCGCCTCTTGCGAATTGCTGCTTGCCCAGAGTGTGAAGATCTTCACACAAAGATCTCATCAGTCATCTGTTCCTTGCTTCACCTTTTCAGAGCCAAGGGTCCAGTCCTATTTTGCCTGTTTTCCACAGAGCTAATAGGTTTAATGCAAGATCTAGTGCATAAGAATTTCATGGTCAGGCCATCACCACAATGGCCAGTGGTGGTGGAACGCTTCTCCATCAGGTCTGCAGAGTCTGCTGTTTACCTGACCCCTACCATCCTTCAGCTGTCCTCATGTGCTTCAGCTCAGATGTTGTTGGTAACTTCAATAACAGTGCTGACAGATATTTTGCAGGGCATTTTCTTCCCAAGAGAAGTGGGCATCATATGGAACTCTACTTGCCTCATGCTGTCTAATGGGAGCCCGAAGCTCAAGTCAGCATCTATGGTGCTTTTAACTCGCATTGTAACTCTAGGAGGTTTTCCTGAAGACCATTCACAGCCATTTTTCTCTGCTTATTTGCATCTCCTGGACTCATTGCCTGCTTTTGAAGAGTCAGAGCTCAGTGTCTTTGGCAAAGATTTCCAGAAGCTCTCTCAATGTGTTTTCCTGCCAGAGGAAGGTGCTCACGGCAGGTTTGAGAGAGTCCATCTAAACATGCTGATGGAGAGGCTTGAGAAACTGGTGGTTGGTGGAGCACTAGAGCAGTTGAAGGTAATGGAGGTGAAAGCTACACTTTGTGAAGTCTTCTGCTTTGTCCTCGAGTTTGTTCCTCCCGGATATGAGTGTGCAGTGCCGATCCGGAAAGAGAGAGTTGCAGCCATTTGCAAAGCTGTTATTAAGACCATTGGAACCCAGGACCAGCAGGAGCAAAGTGTGGAAGGCTACCTGTACGCTGCCCTCAGGACAGACGCCATTGCTGCAGTGCAGGATATGCAGGCCGGTGTTTCTGACTCTGCTGATCCTAGTATGTATGAAGAGGAGGTTCCAGCCAAACGACCAAACCTCTCTCTTCCAACCCAACTAAGGAGCGAGGCCAAAACTCAGCCAATGCAGGTGGACATGAAGAGCAGAAGTGAGGTGTGGGCAGCTATAGACAGCCGACTGGATGAGTTACTAATACAGATGAGGGACCACACAGCGAGCCAGTGCGTGAGCACCGTGCAGGGACTGACGGTCATCTTCCACCTGGCTGCACTTTGCTCAAAGCACTGTCTGAATGGACCACAAAGTGGCAGAGGACAGAAGACATCAGATGGAGCCCAGCTCGTCTGGTTAAAGCCTCGGATTTTGGCTCAGGTTGTTGAGAGCTGCCGCACCGTGATGGCAAACACTTCTAATGAGGAAGAGCTGGAGCCTCTAGTGGAGGGCACTGTCAGGATCCTTGATGCTGTCCTCTACCTTAACACCAATAGTCAGGGTGACACAAGTTTTTACAGGAATGTTTGTGCTCTGCTGTCGATTCCTTGGGTGTTTGAGCATTCTTCACAAACGGTTTATCAGACGGCCTCTTTTCCTGCAAGTCTGATTTCACTCTCCCAGAAACTTGATCCTGCCTACTCTGCACAAACTCGAGCACGCTGTGTGTTTCTGCTTGGTCTGCTGTCAAAAAGTGTGTGTGGTGACTGGCGATCGTCGGTTTATCGCTGGGCCATGCAAAGTAAGATGGAAGCCGAGCGGGCCAGTGCCGTCAGAGGCTTCCCCCTTCTGCTGCACCACCTAGGAGTCAAATCCTACAGCCTCATCCACGAGGTCCTTCTCATTTCAGACTCCCATCCCTGCCAGACCTCCTCAATCGGAGCCTCCATCCTCACCCCGTTCCTTCTGCTGCTCAAACCTGTGGAAGACATAAAGGTGAAGCAAGCTTTTATCAGGAATATACGGCACTTATTCAAGCATGTGGATCTGGGTAACAGTGACCCTGATACAAAAGCTCTGGTTAGTGCATTGGTAAACCTCATTGAAGACCCTGACCAGGAAGTCCGCATAATGTTCGGCCAAAACATTAAAAACCTTCTGGAGTTTTGGAATGGAAATGGCTTCCTAAAGGAGCTGTTAAAAGTGCGCAAATCTTGTTTCAATAATGCTTTTGTGCTTCTCAGAGCTGCTGAAGGTAACCTGGTATCTTTTGCTCTGCTTCGCCTTCTGCACTGCCTGCTGTCCAAATCCAATCCCGTGTCAGTAGCAGCCTACACAGAGATCCAGGCTTTGGCCACATGTAGAGACCTCAAACTGCAGTCCTTCTTCAACCAGTACAGGAACCCAATTTGCCAGTTCTTGGTGGAGTCTTTGCACTCACGACACGTGACGGCTCTGCGCTGCACTCCAGATCAGAGCAGCGAGGCTCTGCAGGAGGAGGCGGCACATCAGAGAGAGCTGGCACTGGACATCCTTTCTCATGTTGCACATGTCTTTGATTTCCCTGACCTTAATCGTTTCCTCAATCGGACACTACAGGTTCTTCTTCCCTTTTTAGCAGCCAAGGCCAGTCCTACTGCTTCAGTTCTGATCCGCACTATTGCCAAGCAGCTAAATGTCAACCGCAGGGAAATGCTCATCAATAACTTCAAATACATATTCTCCCATCTTGTGTGTTCCTGTACCAAGGAGGAGCTGGAGAGAGCCTTCCACTATCTTAAGGATTTCCAGGGTCTTCATAATGAGCTGCTACTGCGTCTAGGAGAACACTACCAGCAGGTCTTTAATGGACTTGCTATTTTAGCTTCTTTCGCCTCCAGTGACGACCCCTACCAGGGCCCAAGAGAAATCACCACCCCAGGACGCATGGCCGATTATCTGCAGCCCAAGCTCCTGGGCATCCTGGCTTTCTTCAACATGCAGCTGCTGAGCTCTAGCGCTGGAGAGAAGGAGAAAAAGAAAATGGCTCTGAACAGTTTAATGGCCCTGATGAAGCTGATGGGTCCAAAGCACATCAGCTCAGTCCGAGTGAAGATGATGACCACACTCCGAACTGGCCTGAGGTACAAGGACGACTTCCCAGAGCTCTGCTGCAGGACGTGGGATTGTTTCGTGCGCTGTCTTGACCCCCCTTATCTGGGTCCACTTCTGAGTCATGTAATCGTCGCTCTATTACCTCTCATCTCCATCCAGCCTAAAGAGACAGCGGTGATCATGCACTACCTCATAGTGGAGAACAGGGAGGAAGTACAAGACTTTCTTCATGAAATTTACTTCCTTCCTGACCATCCAGAACTGAAAAACATTCACAAGATCCTTCAAGATTACCGTAAGCAAACCTCAAAGAGCACCGACATGCAGACAGCACTGCAGCTCTCCATGCGGGCGATCCAGCATGAGAATGTGGATGTACGCATCCATGCGCTCACCAGCCTGAAGGAGATGATATACAAGAACCAGGATGCTCTATTAAAACATGTCGTGGACAGTGAGATGGTAGAGCCGGTGATCTCTCAGTTGGTGACTGTGTTGCTCCGGGGCTGCCAGGACGTCAACCCTGAAGTCAGGCTTTTGTGTGGGGAATGCCTGGGGGAGTTAGGAGCCATTGATCCTGGTCGGCTTGACTTTTCACCTGCTGACACTCAGGGAACTGGCTCAACATTTGTGAGTGGGATCGATGATCCAAATTTTGCTTATGAACTACTGACAGAGCTGACCAGAGCCTTTCTGGCCTATGCAGATGATGTGAGAGCTCAAGATGCTGCGGCGTACGCCATGCAGGAGCTGCTATCATTATTTGAATGTCGGGAGGGCAGAACTGATTCACCAGGTCGCCGTCTATGGAGAAGATTCCCAGAGCAGGTTCAGGAAATCCTAGAGCCACATCTAAATACCAGGTATAAGAGCTCTCAGAAGGTTGTGAACTGGTCGAAGTTGAAAAAGCCAATATATCTCAGCAGCCGTGGAAGCAAATTCTCTGACTGGTCTGCAACCTGGGCAGGATATCTCATCAGTAAAGTTAGACATGAGCTTGCTGGCAAAGTGTTCAACTGCTGTAGTTTCATCATAAAGCATGATTACAAAGTGACAATCTACCTGCTGCCCCACATTTTGGTCTATGTGCTGATTGGATGCACTCAGGAGGAGCAGCGAGAGGTGAATGAAGAGATCATGGCAGTCCTGAAGGAGGGTGACCCACGGTTATTGCGACTGCAGGACAACGCCTCCAGTTTGAGTCAGCTCAGCACACAAACGGTCTTCTCCATGCTGGACCATCTCACTCAGTGGTCCCGCCACAAATTACACAGCCTGAGTACCAACAAGAGATCAGGAAAACATGCCAGAGAGCAGCCGCAGACACAGGCAACAGGCCCAGAGAGCAGTGAATATCAAAGCGTAGTAGCCTTCCTCAACAGCATTCCTCAGGATGTGCTGGCCAAGGCATCCTTTCGCTCCAGAGCCTACACACGGGCTGTCATGCATTTTGAGTCCTTCATCCGTGAGAAGAAACAGAACATTCAGGACCATCTTTCATTCCTACAGACTATGTATGCAGCCATGCACGAGCCAGATGGTGTGAGGGGTGTAAATGATCTGAGGAAAGAGGAGCCTTCATTGAGAGAGCAGATCCTGGAGCACGAGAGCATTGGACTTCTGCGTGAATCTACTGCCTGCTATGACAGAGCCATCCAACTCGAGCCAGACCAGATCGTCCACTATCATGGGGTTATGAACTCTATGTTGGGCCTTGGTCAACTCTCCACAGTAATAACCCAGGTCAATGGAGTTCTAGCAAGCAGGCCACGATGGAAGTCCGATCTGAATGCTTACCGGGTTGAGGCGGCATGGAAGCTGTCAAAGTGGGACTTAGTTGAGGACTATCTTGCCTCTGATTGTAAGTCCAGCACATGGGGTGTCAGACTTGGCCAAATGTTGCTGGCTGCCAAGAAGCAAGATTCAGAGGCATTGTATGAAAAGCTTAAAATAGCCAGAAAAGAGCAGGTTGTCCCTTTATCAGCTGCCAGTTTTGAGTGTGGCACCTATCAGAGAGGATATGAGTACATAGTCAGGCTACACATGCTGTGTGAGTTGGAACATGCCTTCAGTGAGCTGCAGAAGGAAAGCACAGAAGCTGGAGGATCCAAGAAGACTGAGCCCAAACTCAACTGGGACGCCCGCCTACTCATGACCCAAAACTCATTCAGAGCCAAGGAACCCATCCTGGCTCTGCGGAGAGCTCTTCTCAGTCTCAGCAAGGGGTCTTCATGTGAGGAGCAGGTTGGCGAGTGCTGGCTGCAGAGCGCTCGTGTAGCCAGAAGAGCTGGCCATCACCAGACAGCCTTCAACGCCCTGCTCAATGCTGAGAACTCCCACCTCTCTGAACTCTTCATCGAGAAAGCCAAATGGCTGTGGTCTAAGGGTGATGTGCATCAGGCTCTGATAGTCCTGCAGAAAGGTGTGCAGCAGTGTTTTCCTGATGACCAGCCACTCACAGACCCCAAGAGAATTCAGATCAAAGGGAATGCCATGCTGCTGGTGGGCAGATACATGGAGGAGACGGCCAACTTTGAGAGCAATGCTATTATGAAAACCTATAAGGATGTCACCTATCTGTTGCCAGAATGGGAGGACGGTAACTTCTACCTTGCCAAATACTATGATAAGGTTATGCCTATGGTCACTGACAACAAACTGGAAAGACAGGGCAACCTCATTCGTTATATTGTCACTTATTTTGGAAAAGCCCTGCAGTTTGGCAATCAGTACATCTATCAAGCCATGCCCAGAATGCTAACCTTATGGCTAGACTTTGGAGCCAAAGTTTATGAGTTTGAAAAAGCTGGCCGCTCTGACCGAGTCCAGATGCGTGGTGAACTTACTAAAATCAATTCCGTCATCAGCGAACACACTAGCAACCTCTCTCCCTACCAGTTCCTCACAGCCTTTTCACAGCTCATCTCCCGAATCTGCCACTCCAACAACGAAGTCTTCGCTGTGCTGATGGAGATTGTTGCCAAAGTCTTCTTAGCTTACCCACAACAAGCTATGTGGATGATGACTGCTGTGTCAAAGTCCTCCTATCCGACTCGAATGAACAGATGCAAGGAGATCCTGAAGAAGGCCATCAGTTTGAATGACTCATTTGGCAAATTTATCGGCGATGCCAACAGACTGACCGACAAGCTGGTGGAGCTCGGCAATAAACCAGTGGATGGGAACAGCAGCACCCTCAGCATGAGCGTACACTTCAAAACGCTGAAGAAACTGGTGGAGGAGCCCACCTTCAGTCAGATCCTTATCCCCCTGCAGTCTGTCCTTATACCAACCCTGCCCTCCACTGGAGGAGCCAACCCCAAACACGACGCCTTTCCAGGGCACTGGGTCTACCTCGCCGGCTTCGATGACACTGTGGAGATCTTGGCATCCTTGCAGAAGCCAAAAAAGATCTCGCTCAAGGGCTCGGATGGAAAATTCTACACCATGATGTGCAAACCCAAAGATGACCTGAGGAAAGACTGCAGGCTGATGGAGTTCAACTGTCTCATTAATAAGTCTTTGAGGAAAGATGCAGAGTCTAGACGGAGGGATTTGCACATTCGAACATATGCCGTCATCCCTCTGAATGAAGAGTGTGGCATAATAGAGTGGGTCAACAATACGGCGGGTTTACGCCACATCCTCACAAAGCTGTATAAAGAGAAAGGGATCTATGTCAGTGGAACAGAGCTGCGTAAGCTGCTTTTGCCAAAAACAGCTTCATTGCAGGAGAAGCTGAAGCTGCACAAAGATGTGCTGTGTGCCAGACACCCACCAGTTTTTCACGAGTGGTTCCTACGAACATTTCCTGATCCCACCTCTTGGTACAACAGCAGGTCTGCTTACTGTCGTTCTACTGCGGTCATGTCTATGGTGGGCTATATTCTTGGGCTTGGCGATCGCCACGGAGAGAATATTTTGTTTGACTCTTTAACCGGCGAATGCGTCCATGTGGATTTCAACTGCCTTTTCAACAAGGGGGAGACATTTGATGTTCCTGAGGTGGTTCCCTTCCGGCTCACTCAGAACATGGTTCATGCAATGGGGCCCATGGGCACAGAGGGTCTGTTCAGACAGGCCTGTGAAGTCACACTCAGACTCATGAGGGACCAGAGAGAGCCACTCATGAGTGTTTTAAAAACATTCCTGCATGACCCTTTGGTGGAGTGGAGCAAACCTGTCAAGGGTTCCTCTAAGACACAAGTTAATGAATCTGGAGAGATCCTCAATGAGAAGGCTAAGACTCATGTTCTGGACATCGAGCAGCGTCTTCAGGGAGTGATCAAGAACAGAAATAAAGTGATGGGCTTACCTCTGTCCATTGAGGGCCACGTACACTACCTCATTCAAGAAGCCACTGATGATAATCTGCTGTGCCTGATGTACCTTGGATGGGGTCCTTATCTGTGATGGACATTTGCACTTAAGAGTTTGAGACCAAAACTCAACACAAGCTTTCAGTTTAGTTCTGTATTTGTCAGTGTTATTTTCAATGTTCCTCAACAGGTTAA

Function

symbol description
atr Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including determination of left/right symmetry; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of heart looping. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; optic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Seckel syndrome 1 and pancreatic cancer. Orthologous to human ATR (ATR serine/threonine kinase).

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process

KEGG:

id description
K06640 ATR; serine/threonine-protein kinase ATR

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_04754556_04784656.mRNA True 7769 mRNA 0.49 46 4754556 4784757

Neighbor

gene id symbol gene type direction distance location
CI01000004_04690908_04706755 ATP1B3A coding upstream 47656 4690908 ~ 4706900 (+)
CI01000004_04535801_04536013 NA coding upstream 218047 4535258 ~ 4536509 (+)
CI01000004_04498877_04532504 CLCN2, CLCN2A coding upstream 221470 4498877 ~ 4533086 (+)
CI01000004_04414110_04428551 CC2D1B coding upstream 326005 4414110 ~ 4428551 (+)
CI01000004_04412723_04413196 NA coding upstream 341360 4411601 ~ 4413196 (+)
CI01000004_04786239_04788953 NA coding downstream 1482 4786239 ~ 4788961 (+)
CI01000004_04798717_04889650 ARHGEF4 coding downstream 13960 4798717 ~ 4889650 (+)
CI01000004_04924543_04956339 VAV3B coding downstream 139751 4924508 ~ 4956435 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding downstream 369292 5154049 ~ 5203177 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding downstream 442857 5227614 ~ 5232052 (+)
G27278 NA non-coding upstream 30926 4723420 ~ 4723630 (+)
G27271 NA non-coding upstream 58639 4694973 ~ 4695917 (+)
G27265 NA non-coding upstream 67634 4686708 ~ 4686922 (+)
G27254 NA non-coding upstream 78341 4650406 ~ 4676215 (+)
G27183 NA non-coding upstream 93419 4659347 ~ 4661137 (+)
G27295 NA non-coding downstream 110795 4895552 ~ 4900837 (+)
G27293 NA non-coding downstream 120402 4905159 ~ 4993021 (+)
G27148 NA non-coding downstream 206646 4991403 ~ 5116579 (+)
G27383 NA non-coding downstream 323505 5108262 ~ 5126498 (+)
G27388 NA non-coding downstream 348448 5133205 ~ 5133577 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1202110 3550329 ~ 3553423 (+)
G26245 NA other upstream 1232163 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 1995618 2745885 ~ 2769135 (+)
G25992 NA other upstream 2017788 2736536 ~ 2736768 (+)
G25882 NA other upstream 2181507 2548075 ~ 2573049 (+)
G27805 NA other downstream 588068 5372825 ~ 5373803 (+)
G28165 NA other downstream 947832 5732589 ~ 5733001 (+)
G28302 NA other downstream 1685271 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1786463 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2870015 7654234 ~ 7656383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009045 atr,LOC107677746,LOC107700496 coding CM030126.1 CM030126.1 22559529 ~ 22606887 (-)