CI01000004_05837208_05841141


Basic Information

Item Value
gene id CI01000004_05837208_05841141
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5837208 ~ 5841141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05837208_05841141.mRNA
GCCTGTCAGCGTAACTCCAGTTGACCCCTGCTGCTTACATAATCATGAGCTTTTCATTGAGGAAACTACTATGATGCATATACAGTTTCTCATCCTGGTTTTTTGGCTGAATCTTCACACTCTAACGGCATTCAGGAATGGGCAGGTGACTCAGGCATGCATGTCTATGACTCCTGAACATGGGAATAATGCCTCTACATTAGAACCTCCATATACTGTCACCTCAGATGCCTCTAACTACACAGATGGTCAGGTGATCACAGTGACACTACAAGCAAATGAGACTGGATTCAGGGGCTTTCTTCTTCAGGCCAGGGATGAGAAGGGTCCAGGCTCATCTGTCAGTCATACTTCAAATGATGACAAATCAAATATTGTGGTTCAGTGGAAAGCTCCGAGCAGTAACAACACAGATATTTGGTTCAG

Function

NR:

description
LOC100004603 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05837208_05841141.mRNA True 426 mRNA 0.45 4 5837208 5841141

Neighbor

gene id symbol gene type direction distance location
CI01000004_05812640_05834517 AGL, AGLA coding upstream 2691 5812640 ~ 5834517 (+)
CI01000004_05800602_05802011 NA coding upstream 35121 5800602 ~ 5802087 (+)
CI01000004_05781905_05788633 PALMD coding upstream 47202 5781602 ~ 5790006 (+)
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding upstream 83197 5735798 ~ 5754011 (+)
CI01000004_05474127_05476501 NA coding upstream 360453 5473079 ~ 5476755 (+)
CI01000004_05870493_05877153 OLFML2BB coding downstream 29352 5870493 ~ 5877442 (+)
CI01000004_05920907_05931169 RXRGA, RXRGB, RXRAA coding downstream 79766 5920907 ~ 5931468 (+)
CI01000004_05936410_05942402 NA coding downstream 94037 5935178 ~ 5942505 (+)
CI01000004_05968468_05973840 NA coding downstream 127327 5968468 ~ 5973840 (+)
CI01000004_05995720_05996936 NA coding downstream 154579 5995720 ~ 5998165 (+)
G28136 NA non-coding upstream 115086 5717112 ~ 5722122 (+)
G28023 NA non-coding upstream 191793 5645177 ~ 5645415 (+)
G28020 NA non-coding upstream 195095 5641840 ~ 5642113 (+)
G28018 NA non-coding upstream 197276 5639731 ~ 5639932 (+)
G27924 NA non-coding upstream 255498 5481805 ~ 5581710 (+)
G28178 NA non-coding downstream 5335 5846476 ~ 5846828 (+)
G28148 NA non-coding downstream 40340 5881481 ~ 6018658 (+)
G28159 NA non-coding downstream 104557 5945698 ~ 5947048 (+)
G28154 NA non-coding downstream 110528 5951669 ~ 5953194 (+)
G28213 NA non-coding downstream 181321 6022462 ~ 6022687 (+)
G28165 NA other upstream 104207 5732589 ~ 5733001 (+)
G27805 NA other upstream 463405 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2284762 3550329 ~ 3553423 (+)
G26245 NA other upstream 2314815 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3078270 2745885 ~ 2769135 (+)
G28302 NA other downstream 628887 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 730079 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1813631 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2592564 8414316 ~ 8439933 (+)
G28859 NA other downstream 2758094 8599235 ~ 8599603 (+)

Expression


Co-expression Network