CI01000004_07152468_07158014 (DNAJC1)


Basic Information

Item Value
gene id CI01000004_07152468_07158014
gene name DNAJC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7152468 ~ 7158261 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07152468_07158014.mRNA
AGAGGTCCTGAAAGTACTCTCATGGTAAGAATGGACATGACGCACATGTCACTACTGAAGCTTTCATGCTTATTGGCTCGCTCTGTGGCGGCTGCATGTGAAACGTGTGTACGTACAGCAGGCTGAGCTCAAGCTATGGGCCTGTCTGAGCCAGAGGACGGCAAGTTATGCTAAAGGCGTCTCAAAAACAGGGTTTCCGAATGGATAGTGGCTGTTAAACCTTAACAAACATATAAAACTTTCAGCAATGGCTTTGCCCGAGATCCTTACGTTGGTGTTGTTCTCCGGGCTGTTTGTTATTCAGCCATTGCCAACATTAGCATGGGACGCAGACCTGGAGCTTTTCGATCTAGTGGAGGAAATCCCCCAAACCTTCTACGAGTTCCTCTCGGTTAATCAGGATGCATCCTCTTCTGAGATCAGGAAGGCATATAGAAAGCTTTCACTTACGTTACATCCCGATAAAAACAAAGATGAAAATGCAGAAAACCAGTTTCGACAGTTAGTTGCCATTTATGAAGTTCTCAAGGATGAGGAAAGAAGACAAAGATATGACGACATCCTGGTTAATGGGCTGCCAGATTGGAGACAGCCTGTCTTCTACTATCGACGTGTTAGGAAGATGAGTAATGGAGAGTTGGGCTTCCTCCTTTTCCTCATTCTAACCGTGGGTCACTATGCAGTTATATGGTCCATCTACCTTGAGAAGCAGTTGGATGAACTTCTGAGCAGGAAGAAGAGAGAGAAGAAGAAGAAGCAAAGCAGTAAGATAACAGAAGAGATTAAGTCCTTGGGACAGGACAAAAATGAGAGATCTGACAGGCCACACTGGCATGACATTTTGCCTCTTAAATTAAGCATCTGGTTGTACTATTCAGTGAAGTCTCTCCCTCATATCATACAGGATGTGAAGCAGTATTATAAAGATTATAAGGAAATGAAAGTAAAAGAGAAGGAGGCGGAGGCTCTGGCAGAACAGGAAATGCAGCAGAAAGAAAAACGGCCCAAGGTGAAGAAGCCTAAAGTGGAGTTTCCAGTCTATGAACCCAGTACAAATGCTGCTTTTGTGCCAGCATATGATCAGGGAACATCTATTGAAGACATTGAAGATCAAATGGATGACTGGTTAGAAGACAAAAAACAGCAGAAGAAGAAAGTTCACGAGTGGACAGAGGAGGATCTTAGCCAGCTTTCCCGCTGTATGGCCAAGTTTCCTGGTGGAACGCCAGGCCGGTGGGAGAAGATTGCACATGAGTTAGGCAGATCAGTGTCTGAGGTGACCACAAAAGTAAAGCAAGTCAAAGACTGTGTCACCAATACATCAGGGTTGGTGAAGCTTTCTGAGCTGAAGGGTGGTGCAGTGATGGGAAAGAGCTCCAGAGCTGTCACGGTGCCTGACAGTCTGATGACCCAGAGAGAGGAGCCCTTAGAGCAGCAGCAGCCAGAGGATTCGGCAGAGCTTGTTGGGGCAGAGGACTCGGAGAGCAAAGCGCTCAGAAGGAGGACAAAAAAGTCTGCACCCGGGAGCACTGGAACTGGAGCAGCGGAGGAGAAGGTGAAAGGACGCAGACAAAGAGACTTCGACCCCACAGCTGTGGATGACGACAGTGAAGATGAGAAGAAACCATCAGCCTCCAAAGAAAAACCCAGTGCTGCTGATGATGTCTGGACACAGAACCAGCAGAAGCTCTTGGAGCTGGCCTTACAGCAATACCCACGTGGCACCACTGAACGCTGGGACAAGATCGCTAAGGTGGTGCCTGGAAAGACCAAG

Function

symbol description
dnajc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K09521 DNAJC1; DnaJ homolog subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07152468_07158014.mRNA True 1774 mRNA 0.47 11 7152468 7158261

Neighbor

gene id symbol gene type direction distance location
CI01000004_07142439_07146139 NA coding downstream 5857 7142427 ~ 7146611 (-)
CI01000004_07102190_07122451 VIPR1A coding downstream 30017 7101045 ~ 7122451 (-)
CI01000004_07091217_07093407 ZBTB47 coding downstream 59061 7091200 ~ 7093407 (-)
CI01000004_07055639_07067152 CTDSPL, CTDSPLA, CTDSPLB coding downstream 85316 7055410 ~ 7067152 (-)
CI01000004_07024832_07032532 AFG3L2 coding downstream 119307 7023693 ~ 7033161 (-)
CI01000004_07161002_07162898 NA coding upstream 2428 7160689 ~ 7163368 (-)
CI01000004_07172745_07186598 PIP4K2AA, PIP4K2AB, PIP4K2A coding upstream 13988 7172249 ~ 7186959 (-)
CI01000004_07200551_07206146 RIOK1 coding upstream 42099 7200360 ~ 7206146 (-)
CI01000004_07209004_07224321 RREB1B, RREB1 coding upstream 50416 7208677 ~ 7224321 (-)
CI01000004_07256668_07257382 NA coding upstream 98104 7256365 ~ 7258480 (-)
G29358 NA non-coding downstream 1958 7149182 ~ 7150510 (-)
G29476 NA non-coding downstream 54488 7097742 ~ 7097980 (-)
G29451 NA non-coding downstream 174859 6977386 ~ 6977609 (-)
G29441 NA non-coding downstream 188131 6964133 ~ 6964337 (-)
CI01000004_06960750_06963258 MPLKIP non-coding downstream 190979 6959573 ~ 6963282 (-)
G29492 NA non-coding upstream 100944 7259205 ~ 7259458 (-)
G29494 NA non-coding upstream 102383 7260644 ~ 7260971 (-)
G29495 NA non-coding upstream 103099 7261360 ~ 7261574 (-)
G29507 NA non-coding upstream 129654 7287915 ~ 7288131 (-)
G29388 NA other downstream 520561 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 606896 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 1524954 5616644 ~ 5628289 (-)
G27746 NA other downstream 1948744 5178227 ~ 5203724 (-)
G26788 NA other downstream 3876747 3267683 ~ 3275721 (-)
G29656 NA other upstream 806103 7964364 ~ 7965500 (-)
G29746 NA other upstream 1196237 8354498 ~ 8358127 (-)
G30316 NA other upstream 2219676 9377937 ~ 9406921 (-)
G31203 NA other upstream 3588176 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 4249204 11406957 ~ 11412907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location