CI01000004_07209004_07224321 (RREB1B, RREB1)


Basic Information

Item Value
gene id CI01000004_07209004_07224321
gene name RREB1B, RREB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7208677 ~ 7224321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07209004_07224321.mRNA
GTTATATTGAGTGCTGTGTGAGTAATGAAAATTCTCCATTCTTAGAAATGGAAAGTGCCTCCTCTGAAAAGCCTGTCAGCAATGGTGTTGGTGCTGCTGATGTGAATGAACAGTCTCATTTGTCAGAAGAGGCTGTTAACAATCAGCCATCCACACATACACCAGAACCTGTTGAAGAAGAAAACTGTGATGGAACGGACAAACCAGAGCATGAAGATGAAGTCAGAACAGAGGAGGAGCTGTCCTCTATCAACTCTATGATGAGCACTGTGATGAATGTGGGCCAGATCAATGGAGTCGACTCTGAGCCCACCAAAACATCTCCCAGAAATACCACCAAATCACCTTCTGTCAGTCGTACTGGGAGAAGAAATCAGGGAATGTCAGCTGCAGTAATAACTACATCTGTAGTAGGTTGCAGCGGTCAACAATATCCTTTGAATGCTAATCCCATATTTATTGTTATGATTTTTCCTGATTTTCTACAAGTGGTCTGTCTCATCCCACTCATACTATCTCTGGTAGTCAGTCAGACTGGCAGTTACATGATCGGCAACAAATGGTCCTTGCGCTTTCTCAATCCCCCCTTTGTGAGAGCCGATGCTTGTCTTATGCCTTCAATTAAAGTGTGGGATTCGACTGAAACACTTCTCTGTGGAGAAAACAGGGTCCATGACTCTCATGAGGAAGTCAAAGATGAACGCTCAAGCTTCATTTGCCCCCTGTGTAACAAAAACTGCATGACACAGCACCAGCTCACCATGCATATCAGACAGCATAACACAGATAGTGGGGGCACTGACCACTCCTGCAGTATCTGTGGGAAGGCTTTGAGCTCGGCCAGTTCTCTGGACCGCCACATGCTGGTTCACAGTGGAGAGAGGCCATACAAGTGTGTGATATGTAGCCAGACATTCACCACCAATGGAAACATGCACAGGCACATGAAAATTCATGAAAAGGATGCAAACAGTATTCCTACCCTCAGTTCTTCCACACGAAAGCGCCAACGACCCACTACTAATAGGAAGCCCAGTGTAGAGGATGAAGCAGAGCAGGCTGAGGAACCACCAGTAAAAAAGGTGATGTTGATACAAAAGCCTGGAGAGGATGATTCTGTCAAGAGTGAAGAAGAGCTCCTTCACTGCCCCATCTGCTTTAAGACATTCATCTGTAAATATGATCTGGAATCACACATGGAGACACATCCTGACACTACACTCAGGTGTAACATTTGTTGCATTACCTTTCGCACACACCGTGGTCTCCTGCGTCATAACGCTGTCATTCATAAGCAGCTTCCCACTGACCCCTCGGGACGACCCTTTATCCAGAATAACCCCTCCATCCCTTTGGGGTTTGGAGACTTGGCTTTCATTGACTTCAGCTGTCAAAAGTTTCCCCAAATTGCACAGGTCTGGTGTGAGAGCAATTTGCGCAGATGCTCTAGCAAGTTCCATAAATTTGTTTGTGAGGTCTGCAACAAGGCCTTCCCTCTTCAGCAGTCTTTGGATCTCCACAAATTCTCACATAAATGTAGCGCAGACACCAGCACTGAACCTCAGGAACAAAACGCTTATGCTGTTAAGGATGCACCCAAAGTCAGCTCCCATTCCATGGATTCCAAGGAGGTCAATGAACTAATACCACATGTTGATAGTACCCGTTCAGATGGAAAGAATGGTTTCATGGAGTGCCTAGGTCTCCAACACTCCTCTTTAGCCAAGCCAGAGAAATCAGAAGAGCAAATTCAGCAGGAAGTTTTAGACAGCATTCGCTTCATTCGCGTTGAGCCACCTTCAACAAATCTACCTCAAGAAAGCAGTAGCAGTCTTGGCATCTCTATTTTGGAGCCCGTCTCTCTTCAAGCCATGAACAAGAACGCTGCTCTCAGCCTCCTGTCCCTACAGCCGCTCCATGGTGTCGTTAGTAGCGGTATGTTTGTCCCAATAAGTGGTCAAGCTGCGGTGGAGCTGGCGGACATTGAACAAATCCTTAAGATCGCAGCCTCAGTGCCACCTCAGATGTCTTTGTCTCTGCTTCCCAAAGGTCTGGGCAGTCCTCTACAGATGGACCCCAAACAGATTGCTTCCCTGAAACCTAAGCCCTTAATCACTCCTCGATCCAGCATGGGTGCTTCCACACCCCCTCCACCCATCATGAATGCCCAACAAGCCTCATCGGGTAACATCAGTCCTAGCCTTCCACCCCAAACGGGCCAACAAGTGAGAACTACCAGACAATCATCAGCCTCCTCTTCGTCCTCAACCTCGTCCTCTCCCACAAATTGGGAGACTACTCAACTGGGGCCAGATGTCATAGGAACCACGATTATCTCGTATGAAACTGGAAAGCAAGAAGAGTTTGACAGCAAAGAGAAGGAATCAAGAGTCGTGGGCAAGAAGACAGCCAAGGCCGAGTACCCTTGTCGATTCTGCAAAGAAGTCTTTTCCTTCTTAGGCGGCCTTCAGGCTCATATGCGTCACCATCTGGGAGCTTCACCATATCAGTGCACCATTTGTAGCTACGCCGCTCCTGACAAGGCAACGCTGATTCGACATCTCAGAACGCACAGCGGTGAGCGGCCATACGTATGTCGCCTCTGTCATTACCCTTTCACTGTGAAGGCCAACTGTGAGCGCCATCTGCGAAAGAAACACATGAAGAACACACGCAAAGACATAGAGAAAAACATAGAATATGTAACCACCTCCTCTAGCATAAGCGGTGTCATTGGAGGCACCACATTAGACCTCCTGGATGCGGCTGGTGCTGGTAGCACATCTTGTCGATATTGTGGGGAGGACCTTAAGAACTACCGAGCCCTTCAGATTCATCTGAGAACACACAATGGATGTCAGCGGAAGCCTTTTGAGTGTAGGCAGTGTGGGGTGGCATTTCTCGCTAAAAGGAACTGCATTCACCACTTGCTGAAGCATCACCCAGATGTTCCAGAAAGGGAAATTGAGGAACACATCAAAAGTCTTGTACCGGTTGGAGGAGATGGCACTGCTCAAGCCAACCCTCCAACCTCAAATGGGCTGGTTAACAGCACTGTTCCTCAAAATGTAGGTCCCTTCTCTGGGCCTGTTGAGGACCAGGACCAGCCATTAGATTTCTCTAGCAAATCTCAAAAAACAATTGCTTCAAATGTTAAGCTAGAAGGAACAACATCTCCTCTGTTTAATGACTGCTCTATGGAGCCCATTGATCTCTCAATACCTAAGGATCCTGAGAAGAAGAGAACGATGAAAGAACTTCCTCAGAGCATGTCCCTGAATCATCATAATGTCAAGAAAGAAAAGACCCCTGAAACAACCCCTGGGGTTCGTGCAGCTCTCCCAGTCTCCATTTCTAACCTGGCCCCAGCTGTATCTAGTGACATTACCAAGCCCTTTACCCGCTTGAAGCCACTGTTACCAAAACCATCTTCTGTTTCCAGTACTTCTGAAATGGCACCGCTGGCCTCCATTGCTCAGATCATCTCATCTGTGTCAGCTACCCCAGTGCTGATTGAAACAGAATTAGATGCCAAGAACAGTGTTAGTGCAATGGATTTTAATGTAATAAATGAGAAGAAGGGCACCGCCAAACTGGATTCCACTCCAAATGGATCTCCTGATAACTCAAAGAAGAGAGGCAAGAAGCGACCATTTCAGGAATTCTGTGATCCAAGATTGGCAACAGGCAGTGGCATTGATCTGGAGTCAAGTGGCGAGTTTCCCAGTGTAGAGAAAATGCTAGCTACTACTGATGCAAATAAATTCAGCCCTTACTTACAACCCAGTCAGATGGAGCCAATGAAAGAGGAGAAAGAGAAGCAGTCTGTCAATAAGGAGACGAAGGAAGGACGAGAGGACAAGCCAAAGAAACCTCCACAGAACAAAGGAAAGAAGAATGCCTACTCCAATTCAGTGCAGAAAATGACCTGCCCATACTGCCCACGTCTGTTTCCCTGGGCCAGTTCATTGCAAAGGCATATGCTAACACACACAGGTCAGAAGCCGTACCCTTGTCCTCAGTGTGAGTCATTCTTTTCCACCAAGTCAAACTGTGAGCGCCACCTGCTCCGCAAACATGGAATATCTAATCGGGCACTTCAAAACAATGGATCTCGACCCAAACCTAAGGCTGACGAAGGATCCCAAGGAAGCACAGGCACTTTTGAGAGTGTATCTGACACTGAACCTTCTACAGCCGTAGATATTGTCGATACGAGCTCTGTCGACCCAAAACAAGAGGAGAAAGCTTCATCCCCAGAACAAGCTCCAGAACAAACAGAACAATCAGCCGCTGAACAAACAGACAGCAGCACGGATCCAAACCAAACACAGCCAGATGAGGGAAACCCTGAAAGAGTAGAAAATGATGATGATGACTCTCAGAGCAACAAGAGTCTTGATATAAACCTTGCCAGCAAGCTTGTAGACTTCAAGCTTTCTGGAGCAGAGCAGAACCAGCCAAAATCAACTGCTGAACCGGTTTCTCTTCCAGACGAGTTCCCCCACACCTGTGCATCCTGCAAAAAGACCTTCCGCCATGCAGCCACTCTCAGCCGGCACCAGAAAACTCATCTGGAGGTCCAGCCCGAGGATGGAAGCAAGAAGGGAAGACGCCAAAGTGCTTCACAAAACCCAGTCACAGCGCCCACAAAAGAGGTGGAGCAGGACGCAAAGTTAGAAGATGATGAAAAGGATGAGAACAGCAGCTGTGTAGAAAGTGGTGTTGATGAGGAGGAGAAGGAGAGAGAAGATATGAGTTATGATGAAGAAGAGGCTGCTTCCTCAGAGCTCAGGGCTTTGGAAGAGGAGGGCGAATCAGCCGGAGGCAAAACCGATAAGAGAAAGAAGATTTGTGAAGTGTGCAGCAAACGCTTCTGGAGCCTGCAAGACTTGACCAGACACATGCGTTCACACACTGGCGAGCGACCGTACAAGTGCCAAACCTGCCATCGTACCTTCACTCTGAAGCACAGTCTGGTGAGGCATCAGCGTGTCCACCAGAAACCCACGGATGAAAAAGGGACCGATGATGCAGAAATGAATGAAGAAATGGATGGAGCAAGAGATGATGACAGAATGCTGGAGGGAAAAGAGGCCAGGTGTTCATCTGGAAGCGAAAGTGAAGCAACAGCTCCAATCCAGAGTGAGAATGAACGTGAGAAAGCAGAAGTGCCTCAAAAAGAAGAGAGTGAAGGACACATGGAGGACCTTAAGGAGAAGCAGCACCCTGAGGAATCATCTATGGAGATGAATTCTGCTGAAGAACCTCCCAAAGAACCTCAGCCTGATGGGGCTGAACAGGAGGAACATCAAACCGAGGAACCGTTAGTTGCTTCAGTAGAGGCCCAATCAGGCTGTGACCCAGAACCTGCAAAAATCAGTGTCCATAGCTGTACAGCGGCTCAGGAAACGACGCCTGTTCAGTGAAGAAAAAATTCACTGTGTTGATTTTGTGCCATAGTTTATGAAGCTTCCGCAAACACTAGGAGTTACAAAGCCTGGCCTTTGCTGATATTTGTCTTATAATACCGTATGCATGAAAGATGCAGACTGGGGAACAGTTTCTGAAGCTTCTTTTGATGCCTTAATATATATATATTTTTTTTCTTTTTTCTAAAAATCTGGATAAACACAACTGGACAGTAGCAATTTTAATCCTATTTATATGATTTTTAATGAATCATATAAAACATTTATATCAATCAATTAGAAGCATTTGTATGATGAACAGAAGATTTATGTATCAGCATTAAA

Function

symbol description
rreb1b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RREB1 (ras responsive element binding protein 1).
rreb1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including positive regulation of cell migration; regulation of cell morphogenesis; and regulation of transcription by RNA polymerase II. Located in fibrillar center and nuclear speck.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07209004_07224321.mRNA True 5756 mRNA 0.47 14 7208677 7224321

Neighbor

gene id symbol gene type direction distance location
CI01000004_07200551_07206146 RIOK1 coding downstream 2531 7200360 ~ 7206146 (-)
CI01000004_07172745_07186598 PIP4K2AA, PIP4K2AB, PIP4K2A coding downstream 21718 7172249 ~ 7186959 (-)
CI01000004_07161002_07162898 NA coding downstream 45309 7160689 ~ 7163368 (-)
CI01000004_07152468_07158014 DNAJC1 coding downstream 50416 7152468 ~ 7158261 (-)
CI01000004_07142439_07146139 NA coding downstream 62066 7142427 ~ 7146611 (-)
CI01000004_07256668_07257382 NA coding upstream 32044 7256365 ~ 7258480 (-)
CI01000004_07266248_07272453 CDYL coding upstream 41879 7266200 ~ 7272453 (-)
CI01000004_07327597_07330648 NA coding upstream 103276 7327597 ~ 7330648 (-)
CI01000004_07331060_07339831 NA coding upstream 106554 7330875 ~ 7339831 (-)
CI01000004_07388945_07408147 TGFR1, TGFBR1, TGFBR1A, TGFBR1B coding upstream 164140 7388461 ~ 7408147 (-)
G29358 NA non-coding downstream 58167 7149182 ~ 7150510 (-)
G29476 NA non-coding downstream 110697 7097742 ~ 7097980 (-)
G29451 NA non-coding downstream 231068 6977386 ~ 6977609 (-)
G29441 NA non-coding downstream 244340 6964133 ~ 6964337 (-)
CI01000004_06960750_06963258 MPLKIP non-coding downstream 247188 6959573 ~ 6963282 (-)
G29492 NA non-coding upstream 34884 7259205 ~ 7259458 (-)
G29494 NA non-coding upstream 36323 7260644 ~ 7260971 (-)
G29495 NA non-coding upstream 37039 7261360 ~ 7261574 (-)
G29507 NA non-coding upstream 63594 7287915 ~ 7288131 (-)
G29388 NA other downstream 576770 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 663105 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 1581163 5616644 ~ 5628289 (-)
G27746 NA other downstream 2004953 5178227 ~ 5203724 (-)
G26788 NA other downstream 3932956 3267683 ~ 3275721 (-)
G29656 NA other upstream 740043 7964364 ~ 7965500 (-)
G29746 NA other upstream 1130177 8354498 ~ 8358127 (-)
G30316 NA other upstream 2153616 9377937 ~ 9406921 (-)
G31203 NA other upstream 3522116 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 4183144 11406957 ~ 11412907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location