CI01000004_08361560_08363939 (GHSR, GHSRA)


Basic Information

Item Value
gene id CI01000004_08361560_08363939
gene name GHSR, GHSRA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8361268 ~ 8364019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08361560_08363939.mRNA
ACGATGGGGAGTCGGTGGGGAGACTGTCCTCCCCGAGCTCTCTCTCAGAGGAGAATCTAGACGCTCCATGATCTCTCAGCATGCCTGCCTGGACGAACCGGTCCAACTGTTCCTTCAACTGCAGTTGGGATGATAACGCGACATACTGGGGCGTCGAGCACCCGGTCAACATTTTCCCCATTCCAGTGCTAACCGGGGTCACCGTCACCTGCGTCCTCTTCTTCTTTGTAGGTGTAACGGGGAATCTGATGACCATTTTGGTTGTGACAAAATACAAAGACATGCGAACCACCACAAACCTGTACCTGTCCAGCATGGCCTTTTCGGATTTACTCATTTTTCTCTGCATGCCTCTGGACTTATACAGAATCTGGAAGTACCGACCTTGGAATTTCGGCAACATACTTTGTAAACTCTTTCAGTTTGTGAGCGAGTGTTGCACATACGCGACCATTCTGAACATCACTGCTCTCAGTGTGGAGAGATACTTTGCTATTTGTTTTCCTCTTAGGGCAAAGATAGTCGTGACCAAGGGTCGCGTGCGAGGGGTCATTTTGGTCCTCTGGATAGTATCCTTCTTTAGTGCGGGACCTGTATTTGTGCTCGTCGGGGTTGAGCATGAAAATGGGACAAACTCGTGGGATACTAACGAATGCAAAGCGACGGAATATGCCATTAGGTCTGGGCTCTTAACCATCATGGTTTGGGTCTCCAGCATCTTTTTCTTCTTGCCTGTGTTCTGCTTAACTGTTTTGTATACTCTCATCGGGCGAAAGCTCTGGAAGAGAAAGAGGGAGACGATTGGAGAAAACGCTACGAGTCGTGATAAAAACAATAGACAGACAGTGAAAATGCTGGCTGTGGTGGTGTTTGCCTTCGTGCTCTGCTGGCTGCCCTTTCATGTTGGACGCTACCTGATCTCCAAATCCACAGAGATGGGCTCTCCTGTCATGTCTCTCATCAGCCACTACTGTAATCTCATCTCCTTTGTACTCTTTTACCTTAGTGCAGCAATCAACCCTATTCTGTACAACATCATGTCCAAGAAGTACAGGATGGCAGCTTGCAAACTTTTCGGACTGCGTAATAACCCACGAAGAAGCACATCAGTGGCCAAAGGAGAGAGTCCACCGTGCTGGACGGAATCCACTGCCAGTGTGTGACTGCATGTGACAGACTCTCTTTATCATTAACAGCCATTTCAGACCTCATCTACCACTGCCATCATTTTATAAGATGATAGTCTCTTAATTAGACAAAAGATTTATATGAAGGTCTCGTTAATTTTCAGACAGATCAGGGAGTATTTTAGAAAGATGTCATTAACAGCCATTTGTCTATCCAAGCTCAACATTCCATTAGATACTTAGATGTTTTATAAAAATATGCTTGTAAATATAGAGATCTAAAAATGGAGAGAAAAAGATAACTTCAGTTGCCTTAAATCTAAATAAA

Function

symbol description
ghsra Predicted to enable growth hormone secretagogue receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and hormone-mediated signaling pathway. Predicted to act upstream of or within signal transduction. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including brain; brainstem and spinal white matter; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity. Orthologous to human GHSR (growth hormone secretagogue receptor).
ghsr Enables growth hormone secretagogue receptor activity; growth hormone-releasing hormone receptor activity; and identical protein binding activity. Involved in several processes, including actin polymerization or depolymerization; decidualization; and negative regulation of cytokine production. Located in cell surface; membrane raft; and neuron projection. Implicated in obesity.

NR:

description
growth hormone secretagogue receptor type 1, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04284 GHSR; growth hormone secretagogue receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08361560_08363939.mRNA True 1455 mRNA 0.45 2 8361268 8364019

Neighbor

gene id symbol gene type direction distance location
CI01000004_08258929_08273708 NA coding downstream 87469 8258778 ~ 8273799 (-)
CI01000004_08249849_08251049 NA coding downstream 109961 8249668 ~ 8251307 (-)
CI01000004_08233410_08241216 NA coding downstream 119949 8233178 ~ 8241319 (-)
CI01000004_08113788_08117378 NCEH1A coding downstream 243189 8113374 ~ 8118079 (-)
CI01000004_08103263_08106420 PCCB, PCCB.L coding downstream 254848 8103263 ~ 8106420 (-)
CI01000004_08587419_08590454 NA coding upstream 223308 8587327 ~ 8590557 (-)
CI01000004_08592797_08594424 CLDN11A coding upstream 228295 8592314 ~ 8594619 (-)
CI01000004_08714010_08716995 NA coding upstream 349863 8713882 ~ 8717059 (-)
CI01000004_08847888_08849951 NA coding upstream 482739 8846758 ~ 8850028 (-)
CI01000004_08857253_08860111 RABGGTB coding upstream 493234 8857253 ~ 8860111 (-)
G29829 NA non-coding downstream 2166 8358903 ~ 8359102 (-)
G29750 NA non-coding downstream 21722 8337169 ~ 8339546 (-)
CI01000004_08049634_08054074 NA non-coding downstream 275238 8049137 ~ 8054511 (-)
G29663 NA non-coding downstream 336068 8023951 ~ 8025200 (-)
CI01000004_07998445_08008810 HLTF non-coding downstream 362954 7997249 ~ 8008810 (-)
G29833 NA non-coding upstream 5131 8369150 ~ 8371242 (-)
G29844 NA non-coding upstream 46707 8410726 ~ 8411219 (-)
G29865 NA non-coding upstream 59043 8423062 ~ 8432906 (-)
G29846 NA non-coding upstream 118637 8482656 ~ 8523479 (-)
G29899 NA non-coding upstream 160286 8524305 ~ 8525995 (-)
G29746 NA other downstream 3141 8354498 ~ 8358127 (-)
G29656 NA other downstream 395768 7964364 ~ 7965500 (-)
G29388 NA other downstream 1729361 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 1815696 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 2733754 5616644 ~ 5628289 (-)
G30316 NA other upstream 1013918 9377937 ~ 9406921 (-)
G31203 NA other upstream 2382418 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 3043446 11406957 ~ 11412907 (-)
G32150 NA other upstream 3412500 11776519 ~ 11780951 (-)
G32207 NA other upstream 4012149 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016401 ghsra coding NC_007113.7 CM002886.2 25551457 ~ 25553632 (-)