CI01000004_10514814_10550774


Basic Information

Item Value
gene id CI01000004_10514814_10550774
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10514814 ~ 10550920 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_10514814_10550774.mRNA
AGCCAGCAAGAAGCAACCAGAGGCTGTGCTCCCATGAGGATGTGGACGGCCACAACAGAAAACAAAGCAGTGCAGATGAGAGCGAGCAGTCAGACCCTCGGTCCCCCCGCACCGTCCCAAGGAGACACACAGTAGGAGGGCCTCGTACTGCTGGGGACGTAATCATCATGCAGTCCTACAACATGGACCATAAGAAAGAGGCCTTTCTTGAGCATTTGAAACAGAAGTATCCCCATCACGCTTCTGTCATCATGGGGCACCAGGAAAGACTCAGAGACCAGTTTCCCGGCATTGTGCAGGTAACGCATTCTGACAATGCCCGAGTGCAAGCGTATGTTGGCACAGCTTGCTTATGCATGTGGAATAGACTTGCATACATGGGGAGTTTCGCATCTCTAAAACACACTACTGTCAGCAGAGATCCTACCAAAGTCGAAAATGAAGCAGTGCACTATATAAGGATTAAGTTCCTTCGGGTCATGCAGGGTGGTAATCTGGCAGCCGTGCATGTCAGAGCAGGTCAATGTGCGTGCTGGCATTGTGATGAGACGCTCTCTGACTCAGTAGATGTGGCCTTCTGCCTGTCGCTTCTTCCTATTGCCGAGAATGGAGCAATGACTTCCAGCCTCGGGATCAGGAGTTCTGGGCACAGTGTACCCCCTCAGTCTGCTGTAGGGGAGCCGGGGGAGCATCTCTCTTTGGCCTCCCTTGAGTCTTTGGAGGCCATGTCAGAGGCAGAAGCCCCCTCCGCCTTCACCCGAGGCAGCCGCTCCCGAGCGAGCCTCCCCGTTGTCAAGTCAACTAACCAGACCAAGGACAGGTCATTAGGTTTCCTCTACCTGCAGTATGGAGAAGATACAAAACAGATCCGAATGCCCAACGAGGTGACCAGTGCAGACACCATCAGGGCCCTGTTTGTCAGTGCCTTCCCCCAGCATCTCACCATGAAGACACTGGAGTCCCCCAGCGTGGCTATATACATCAAAGATGACATCAGGAATATGTACTATGAGTTGACTGATGTCAGGAACATCACTTCACAGTCTTGCCTGAAGGTGTATCATAAAGACCCAGCCCAGGCCTTCAATCACAATGCAAGAGCCAATAATGGAGATATTAGGATCACAAGAGAGAGACTCTACAGCAGCAGACAGCAGCCGGGAGGCCAAAGCCCAGTGCACACTCTGCCTTACAGTCCCATACATTCAGTCCAGGGCTCCATGTCTCCTCCTACACCTCGCTCCATGCCCTCCTCCCCTTCCAGGATTCCATTTGGCCATTCTGTTTCCATGCCCGGTGGCACCACCTTACCCAGGGACCGTCTGTCCAGCGTGCCCCCCAGTCGCTCCATCACACCCTGCCCCAGTGCTATCCTGGAGCGACGGGATGTAAAACCAGATGAGGATCTGAGCAGCAAGAGCATTCCTATGTATTCAGAAGCATATAGTTCGCCTGAGGCCAGACACAGCCTCGCCTCATCACAAGGCAGCCATAGCGGAGACATCCCAGATGGGGCAGCATATATCCAGCACCGCTCCTCCGTCAAGTCTGTCGGCGCATACCCCGATGGCCAGGACCTGCAGCACTCCCTCTACAGACAGAAATCTCGCAAGTACAGCGAGAGTCAGCTCGGCTCAATGGGCTCCAAAACTCCACCTGCTTCCCCTCACAGGGTCAATGAGGTCAGAATGATTGACATGCTCCCAGGCCAGAACTCCCACATGCCCTCACAGGGTGTGGCAGTGGAAAGGGCGTCATCTGTTCGAAGATCTATGCGCAAGGACAGTAATGGAGCCATGGAGGTGGCGACCAGGGTGAGAGGCAACGTGGCCTCCCCTGTTTTTGCCGAACTTCCGCCCAGTCATGGAGAGAGGCCGTTTCAAGGTCACGTGGCTGCTGGAGATCCTCAGAGTGAAAGAATAAAGGCTATGGAGCAGCAGATAGCCAGTCTTACTGGTCTTGTTCAACATGCTCTGATGAAAGGGCCAAGTACAAGTGCCAAAGAGACTTCCAGTGACAAACCAGTAAAGGTGGATTCTCTGGCACAGAATGATAGCGTCTATACTGTAACATCATCTAAGGACCCAGCTGTGCAGATAGACAGTCCTTCAGCACAGGTTCATCCTCCTGGCAGAGACCCTGCTATATGCTCAATCCTCTCCACCTTCAGGAGAAACGTCTCTGACCTCAGACTGCAGCTCCACCAACTCAAACAGATGCAGCTGCAAAACCAGGATGCCATGAGGCTGATGCTGCGACAGGTGGAGCAGGAGATCTCAGAAAAGGTATCAGGCACTGTGCTGCCCCTCGAGGACCCTGTTCATAGACAAAGAGTCCAGGTGGAAGAAGAAAGACACAGATATCTGGGCATGGAGGAGCATGTTCTCGTGCAGCTCGGAGAGCTGGAGAACTACGTGGAGATGCTCAAGAAAGAATCCACCTCTGCCATGAGCCTTCGGCCAGTCACTCTGAAGGATGTGGAGGAAGGGGCGGTCAATTTACGGAAAGTAGGAGAAGCTTTGGCCACACTCAAAGGAGAGTTCCCAGACCTGCAGATGAAAATGCGTGCCGTGTTGCGGGTGGAGGTGGAGGCGGTGCGTTTCCTGAAGGAGGAGCCTCACAAAATGGACAGCATGCTGAAGCGGGTCAAAGCTCTGACCGACACTCTCAGTGGACTGAGAAGATATGCCACCGAGAGCCACAACCATACTTCTGACTCAGTCCAAGTGAAGGCATTGCCTACTGATTCAGTTTCCTTTGTGGAGGAGTACAGATCTCCAAAACCTGTTTGTGAGTCCCCCACCCCACAACCAAGATCACCTGCCAAAGTCAACTGCTCGGAGCCCGTGCCATCTTCTCCTGTAACTGTGCACCGCATTCAGACAGCTCCCATCAGCACACACCACCCCAGTCCCCCCCTGACACCCACCCATGGCAGGGACTCCCCCACTGTGGCTAAGGTCAGTCCCAGGAGCAGAGAAAACAGCCCTGCCCTGCAAAAAAGAGCAGCTCCGCAGGGCCAGGAAGCCGTGCTAGTAACGACTGGATCCTCCTCACCTCCACTGCAAGCGGAGGAGATCGCTGTAAACAAAAGCAGGCCCATGCCTGAAGAGGTTTCAAAACGGGCAGTAACGGAGGACACGGTTCACTCTGCTGGACCAGAAGCGGAAAAAGAAATGGAAAGGATCCTTCAGCAGACCCAGGCCAGCCTTATGAAGGCCATACCTGACCTGGAGGTGAGCAGCGAGGTGGACAGCGCCCTCTCTCAAACACCCATCTTGCCGGATGAGGTGGACTCTCCACTTCCTGTGTCTCCACTCCCTGAAGCCTCACCACAGGATGGACCCATAGTCGATAAACCAGTCCAGACCAGTTTGGAAAGGCCACAGAAGCCGACCATAGGAAAACCCCACAGGGCCAGTGTTGACAGAGTGAAGCCCAACCCTGAGATGACCAGTAAATCACCTCCCCCTCCCCCTCCACGCAGATTCTACCCCTCTGGAACTGGACTCACCACTGGACGGTCAGGAGAGGTTATCTACACCACCCGGAAAGAATCCATTAGTGCTCAGGAGGATGAAGAGGAGGCCCCGCAGCCCAAACCCTTGCGTGTGCCCCCAGAGGTCAAGCCCAAGCCCCGCACCCCTCCTGTCAACACCTCCACCTTACAAGATGAAGAGGATGAAGGAGATAAGATCATGGCTGAGCTACAGGTTTTTCAGAAGTGCACTATTAAAGATTTACAGCCCAGATACATTGTCGATCTCACAACCCGTGAGTCCTCAGACAGTGAGATGAAGCCAGGGCTTTCCCTATCTTACCACACAAAGGTCATGTATTATATCACCGGAACTTCAAAGACATCAAATGAGGGCATTTATAGGCCAGATGACCTAAAGGAGCCCAAGGAAGCTACATTTTCTACTTCAAAGGTTGCACCTGTGAATGCTTCTGACCTTTCCCAGCAGCAAAAATTGTTAATATCAGATGACTTCTCTGTAATTTCACTTGAGTCAAAACAATCAGTCAAGGAGGTCCAAAGCAAGCTAAACGATATTCATCAGGTGTCATCTGGTATCTCTTTAAAGAACAGTCCTGAAGTTGGAAAAGAGCTTAAGACTGAATCGGTTCTAAAGTCCCTAAAGCAGGTAGTTCCCCCACCCTCTGAGAAAGTTTCACCTGTTGAGAAGTTAGAGCAGCAGATACTATGTACGTCCTCTGAGCAACCTGTTCTGGATAAGTCAATAAAGCATGGATGTCGCTCAACCACTGTTCAAGTTACACTTGTTAGTAAAAGTCCTCAGAGTGCTGAACCTCATAATCACTCATCGATCCATCAGCCAAACACTGATGCCTCATGTTCAGCACAGCTGAATGACCATGAGAATGGGCAGGAAGTGACAAAGAGATCATCTAGAGGTCCAGTCAGATACACTGAGGAGGCCAGTCTAAGTCCAGACCTCCCAGGAGAAGAAGGTCCTCCTCCACCAAATAACATTGCCTTTAGGATAACTAAAAACAAGGTACAGGCTCTGTCGACAGGAGAATACCAACAGCTGGTAAACAGCAAGGGGACGGATGTCCAGACTCTTAAAGTGGGCTCAGAACCAACCGTACCTGCCCCAGAGGACTCTGGATATGACAAGAAGCCAGTTATCATAATTTTTGATGAGCCGATGGATATCTGTCAGGCCTATAAGCGACTGTCCACCATTTTTGAGTGTGAAGAAGAGCTGGAGAGGGTGCTGTCAGAGGAGAGGATCGATGAAGAGAACGAGGAGGAGGCGGAAGTGGAAGCCAACTCGAGTCAGCTTGGTCAGATAACACCTACAAATAATGCTCTAGATCAGTGCAGAACTGAGAACAGGGTGAATAGTCAGAGAAGTGGTAGCGCTGCATTGCCTCTACAACAGCAGAGTTCCTTCGAGAGTTCTGCTCTTGACGTTGAGGAAGGAGACAAGACAGAATCTCCTAAAGATGCGAAAAAGAAATTCAAGTTTAAGTTCCCCAAGAAGCAGCTTGTAGCTATTGGCCAGGCTCTTCGTACGGGGACAAAAACTGGCAAAAAGACACTGCAGGTCGTTGTCTATGAGGATGAAGAGGAACCAGATGGAACCGTGACTGAGCTCAAAGAAGCTAAAAGATTTGAGATCAAGGCCCACGCAGACTCTGATTCTAACACCCTAAGGTCTTTATCACAAAACCAGACTGGTACATCACAGAGCACCAAAGACAGAACCAAGGAACTCCGTAAGACTACGTATGAAACGTTAGACAGCCTTGAGCAGACCATTAAGCAGCTAGAAAGTACCATAAGTGGCATTGGGCCTACAGTGGTTTCCGAAGTCTCCTGCATGGAAGAATCGAAAGCAAAGAGAATTGCCAGTCATGCAGAACCGGAGGAGGGCAGTCCCACAAAAAAGCCGGCACCTCTGAAGCCCAAACCCCACAAGTCATCACTGCAAAAGAGACCCAAAACACAGTCTCGATCCTCCTCAAGCACGTCCACCTCTTCCAGTTCCTCCAACAGTAAACAGGTGTCTTCGGGTGAACGCACTTGGGAACACTCTGTTTTGAGGGCTCTGTGTGATTTCAGTGGACATGATTATGGACTTGGTGTCCTTCTTTTTCAAATCACTCTGTCTATTTTCACTGCTCAGACTTTTAATGAGAACTCTGGTGACTCTCCGGCTTCAAGTCGGATTTCCTCACCCAAGTCCCGCCAGCAACCAGGGAGTGTGGAAAAACCTGGAAAGCCCCAAAAGCTCCAGGACTCCCAGAGGCAATTCCGACAGTCTTCAATCCCATGTCTCAGTCTGAGCTGGCCCAGCTGTAGACCCGTCTCACCCTCACAGTCTCCCGGGCCTTCTCAGTGTTCTGAAGGCTTTTTTCATGCTGTTCATGTTTATGTGTGGAATGTTTTAGAATATTTATTTGTCAATGCAGAAAAATGGAAGGATGAAGAACAGAATTCAAAGCAACTGTGAAAACTTCACACTTGTTTCTCTGGCAAACATTACATTTATTTCGTATTTGAGATGTATTTTGTGATGGAAAAAAATATTGACCTAATAATATGAAAGCAAATGGCACCAGTTTTAGCACACTTTTTGTAAGTAAAATACTCATAGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_10514814_10550774.mRNA True 6133 mRNA 0.51 24 10514814 10550920

Neighbor

gene id symbol gene type direction distance location
CI01000004_10434104_10435287 PTF1A coding upstream 79245 10431833 ~ 10435569 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding upstream 91512 10376389 ~ 10423302 (+)
CI01000004_10169407_10212947 CDH18 coding upstream 301625 10169407 ~ 10213189 (+)
CI01000004_10058538_10090881 CDH12A coding upstream 423765 10058538 ~ 10091049 (+)
CI01000004_09980195_09995816 CDH10A coding upstream 518921 9980195 ~ 9995893 (+)
CI01000004_10582152_10586349 HTR5AB, HTR5A, HTR5AA coding downstream 31201 10582121 ~ 10586553 (+)
CI01000004_10610634_10613290 ENG2B coding downstream 58860 10609780 ~ 10613630 (+)
CI01000004_10630265_10647904 NA coding downstream 79345 10630265 ~ 10647904 (+)
CI01000004_10683400_10692323 NA coding downstream 132480 10683400 ~ 10692565 (+)
CI01000004_10712377_10730563 KCNB2 coding downstream 161457 10712377 ~ 10730563 (+)
G30787 NA non-coding upstream 39863 10474750 ~ 10474951 (+)
G30780 NA non-coding upstream 60554 10453602 ~ 10454260 (+)
G30688 NA non-coding upstream 67077 10436230 ~ 10447737 (+)
G30681 NA non-coding upstream 169836 10208466 ~ 10344978 (+)
G30689 NA non-coding downstream 142997 10693917 ~ 10697207 (+)
G30839 NA non-coding downstream 150304 10701224 ~ 10701436 (+)
G30678 NA non-coding downstream 181467 10732387 ~ 10736123 (+)
G30861 NA non-coding downstream 199914 10750834 ~ 10751295 (+)
G30863 NA non-coding downstream 203037 10753957 ~ 10754306 (+)
G30797 NA other upstream 17026 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 1533830 8976254 ~ 8980984 (+)
G28859 NA other upstream 1915211 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 2063587 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2858431 7654234 ~ 7656383 (+)
G31710 NA other downstream 1086331 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1113853 11666900 ~ 11667659 (+)
G31865 NA other downstream 1641210 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2091834 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 3472627 14035393 ~ 14039142 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location