G30780


Basic Information

Item Value
gene id G30780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10453602 ~ 10454260 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU34795
TAACAAGCAAATAAAAAAAAAAGGATATGTAAGAAGCCGTGATGCTATGGCCATTTTTATAAAGGATTAGCTACATTTATAGTTTATAGTGTGTTTATTTAAAGATAAGTATGATAAACACTAGAAATAGCATTATATCAAAATATCAATACATTTTTTTTTAATAATTATAATAAAGTAATATACATAAATTAAAATAACATTTTTAATGTATAATATAATATAATATAATAAGTCAGCAATTAGTGTCTATGACAATTTATACACTATTGTTTGAGTTTGGGGTCGGTAGGATATTTTAATATTTTTGAAAGTAGGTTCTTATGCTCTTAAGCTCACCAAGGCTGCTTGTATTTATAAAATACAGTAAAACAGTAATATTATAAAATATTTTAACAACTTAAAAGTAACTGTTTTCTATTTTAATATATTTTAAAATGTAATTTATTCCTGTGATGGCAGAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGGTGCTCAAGAAACATTTCTTAATATTATCATTGTTGATAATATTGTGCTGATAAACATTTTTGTGAAGAAGTTGTTTTTTTTCATTATTTTTTGATGAATAGAAAGTTTAAAAGAGCAGC

Function

NR:

description
PREDICTED: homeodomain-interacting protein kinase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34795 True 659 lncRNA 0.24 1 10453602 10454260

Neighbor

gene id symbol gene type direction distance location
CI01000004_10434104_10435287 PTF1A coding upstream 18033 10431833 ~ 10435569 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding upstream 30300 10376389 ~ 10423302 (+)
CI01000004_10169407_10212947 CDH18 coding upstream 240413 10169407 ~ 10213189 (+)
CI01000004_10058538_10090881 CDH12A coding upstream 362553 10058538 ~ 10091049 (+)
CI01000004_09980195_09995816 CDH10A coding upstream 457709 9980195 ~ 9995893 (+)
CI01000004_10514814_10550774 NA coding downstream 60554 10514814 ~ 10550920 (+)
CI01000004_10582152_10586349 HTR5AB, HTR5A, HTR5AA coding downstream 127861 10582121 ~ 10586553 (+)
CI01000004_10610634_10613290 ENG2B coding downstream 155520 10609780 ~ 10613630 (+)
CI01000004_10630265_10647904 NA coding downstream 176005 10630265 ~ 10647904 (+)
CI01000004_10683400_10692323 NA coding downstream 229140 10683400 ~ 10692565 (+)
G30688 NA non-coding upstream 5865 10436230 ~ 10447737 (+)
G30681 NA non-coding upstream 108624 10208466 ~ 10344978 (+)
G30515 NA non-coding upstream 547056 9906238 ~ 9906546 (+)
G30505 NA non-coding upstream 563846 9889529 ~ 9889756 (+)
G30787 NA non-coding downstream 20490 10474750 ~ 10474951 (+)
G30689 NA non-coding downstream 239657 10693917 ~ 10697207 (+)
G30839 NA non-coding downstream 246964 10701224 ~ 10701436 (+)
G30678 NA non-coding downstream 278127 10732387 ~ 10736123 (+)
G30861 NA non-coding downstream 296574 10750834 ~ 10751295 (+)
CI01000004_08976512_08980033 TTPA other upstream 1472618 8976254 ~ 8980984 (+)
G28859 NA other upstream 1853999 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 2002375 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2797219 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3879181 6570771 ~ 6572667 (+)
G30797 NA other downstream 43116 10497376 ~ 10497788 (+)
G31710 NA other downstream 1182991 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1210513 11666900 ~ 11667659 (+)
G31865 NA other downstream 1737870 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2188494 12646838 ~ 12652570 (+)

Expression


Co-expression Network