G54971


Basic Information

Item Value
gene id G54971
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 21456714 ~ 21456970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU81457
CACTCATAGAGGCTTCAATAGAAACAAAACCTAAAAGAGTTTAGTCAACTTAAGTTCACAGCACTTCACCCCTTTATTTCTCTGAGAGTGGCTGTAGCTAATAACTACTATCAAAGTTTGCAGAATGCAAGCGCCTGTCGTTCTCTCCATCAATTCACtattttcctctctctctctttctcactcactCTTTGTTTAAAGTGACTGGAAGAATGCCAGCTGTTACAAATCCTCCTGATCCTTTACAAAGCTAGCGC

Function

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006023 aminoglycan biosynthetic process biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81457 True 257 lncRNA 0.40 1 21456714 21456970

Neighbor

gene id symbol gene type direction distance location
fto fto,LOC107696699,LOC107550283,LOC107657113,LOC107560393 coding downstream 506743 20834615 ~ 20949971 (-)
irx5a irx5a,LOC107713063,LOC107696697,LOC107564297,LOC107548945,LOC107657111,LOC107755130 coding downstream 826632 20626577 ~ 20630082 (-)
irx6a irx6a,LOC107563500,LOC107713056,LOC107696678,LOC107755049,LOC107657093 coding downstream 937425 20514693 ~ 20519289 (-)
mmp2 mmp2,LOC107713064,LOC107563472,LOC107755129,LOC107696695,LOC107548946 coding downstream 989551 20454260 ~ 20467163 (-)
lpcat2 lpcat2,LOC107713066,LOC107657092,LOC107755048,LOC107696694,LOC107548918 coding downstream 1003356 20442147 ~ 20453358 (-)
cylda cyld,cylda,LOC107551493,LOC107550272 coding upstream 6080 21463050 ~ 21477450 (-)
nod2 LOC107696706,LOC107750230,LOC107551491,LOC107657121,LOC107742770,LOC107550289 coding upstream 26137 21483107 ~ 21489525 (-)
nkd1 nkd1,LOC107696708,LOC107750231,LOC107742769,LOC107657122 coding upstream 41955 21498925 ~ 21523627 (-)
adcy7 LOC107551487,LOC107696709,LOC107750233,LOC107554606 coding upstream 118637 21575607 ~ 21614660 (-)
tent4b papd5,LOC107696711,LOC107657124,LOC107750234 coding upstream 157723 21614693 ~ 21631680 (-)
G54970 NA non-coding downstream 847 21455565 ~ 21455867 (-)
G54969 NA non-coding downstream 1580 21454805 ~ 21455134 (-)
G54967 NA non-coding downstream 3676 21452808 ~ 21453038 (-)
G54925 LOC107740841,LOC107551473,LOC107696704,LOC107742772,LOC107657119 non-coding downstream 57839 21395486 ~ 21398875 (-)
LOC122348266 NA non-coding downstream 160894 21280832 ~ 21295820 (-)
G54976 NA non-coding upstream 39721 21496691 ~ 21497047 (-)
G54977 NA non-coding upstream 40243 21497213 ~ 21497500 (-)
G54978 NA non-coding upstream 40645 21497615 ~ 21497981 (-)
G55065 NA non-coding upstream 331780 21788750 ~ 21789393 (-)
G55189 NA non-coding upstream 625506 22082476 ~ 22082840 (-)
G54872 LOC107713054,LOC107550285,LOC107657115 other downstream 388339 21064933 ~ 21068375 (-)
G54687 NA other downstream 1175908 20278852 ~ 20280806 (-)
G54637 rfx7,LOC107689974,LOC107740453,LOC107563480,LOC107664392,LOC107755110,LOC107553094 other downstream 1455068 19995062 ~ 20001646 (-)
tex9 tex9 other downstream 1479433 19973261 ~ 19977281 (-)
map2k5 map2k5,LOC107755097,LOC107700484,LOC107663978 other downstream 1687309 19726122 ~ 19769405 (-)
cebpa cebpa,LOC107722391,LOC107696713,LOC107551484,LOC107733057,LOC107657126,LOC107580367 other upstream 196351 21653321 ~ 21753438 (-)
G55165 cd59,LOC107560108,LOC107736732,LOC107677235,LOC107722399,LOC107554602 other upstream 595826 22052796 ~ 22056245 (-)
si:dkey-23n7.10 si:dkey-23n7.10,LOC107560112,LOC107742582,LOC107554633,LOC107722376,LOC107703276 other upstream 645944 22102914 ~ 22105329 (-)
LOC122347949 LOC107560124,LOC107722378,LOC107656186,LOC107554594,LOC107742573 other upstream 975430 22432400 ~ 22440439 (-)
otog LOC107722353,LOC107656169,LOC107591037,LOC107703275,LOC107742581,LOC107554595 other upstream 986828 22443798 ~ 22488923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G132951 NA non-coding CI01000026 null 9978473 ~ 9979099 (+)
mexican tetra (Astyanax mexicanus) G111851 NA non-coding NC_035909.1 CM008312.1 17886357 ~ 17886818 (+)