G28819


Basic Information

Item Value
gene id G28819
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8277202 ~ 8284097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32591
GGAAATGTCATTGCTCCCTATGTAGGCCTCACGGAGCCATCGGATTTAAACAAAAATATCTAAATTTGCATTCCGAAGATTAACGAAGGACTTACGGGTCTGGAACGGCACAAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAATACCAGGTGTAAACAAGGCCAGAAATGGACTTCCCAGTGCCTGAATAGACCATTTTCCTTTCACCTCCCTTTGATTATAGGAGGGATGAAAGGCTGCAGTGAGGAAGGAAGGAAGGAAAGAGGGAGGGAAAGAGGAAAAACCATTTATCTGGAGTCAACTTATCAAGGACAGACAATGGTGATTGTAGACACAAGCAGTTGAAGAACAGTGTATTGTCTCAAAAGAAATATACATACATTCAGGAGAGATGAAATTGCTCTCTCTCTTCCTGTCTCCACTGGTGGGCACGAGGAATGTGGGAAATGTGTTAGAAAAAACTGAGACCTTCTAAGCTGGAAACCTTCCTCAGGTTGGCCTAGATTAAAGTGGATCGGTTTCTGTCTAGATCTGACCAAATGTGACGCTTGAGTTCAGGAATTTGTCGTCTGCTTGAGAGATTTGGTATGAAGTTCTTTGCTTTGTTTTCTTTGATTCAAGAAGAGTTGCATGTAAAAAATTTTGCTATCATGGGCTCACTTTATTAACTGTTATCTGCTCACCCTGTCCTGATCTTGTTTTCTGGTATGTTAAATATTTGCCACAGTGAATGAGGGTTTGAAGGCACTGCCAACAGTTTACAGGAAGTCAGCTTGCAGATAAAGGTTAAAGCTGGGTCTTGTTTATCACAATGAGGTGCGAGTTGCTCATCGTCAGAGGCTGTTTACACGCGCTGTCTGTCCCTCTTCCTTGATCCCAAGAGTCAAAGAGTTCAGATTCTCCTTCATGCTCTCTCTCTTCCTTCCTTTCTCTCATTTATTTTCGAAATTGAAACTTTATATGATTGTTTTACAGTGTTGCCAAAGTATCAATATACACAGAAAAATCAGTGACCAAAAGTAAGGTCCCAGCAATTCTTGACTAATTAGTTCATTTTCTATATGTGGTCATTTTATTTTATTTTATTTGTTTTTTTATATATATATATATATATATATATATATATATATATATATATTGCTTTACCTTTTTTTTTTTTTTTTGTTTGTTTGTTTTGTTCAGACAATGAATGAACTAGTGAAGTTGAGAGCTGCTTTTATTTTCTGAAGGTGTGCAGTATAAATATAAATTTCCCTGTGACAGATGCATGACTGCCCTCACCCAGTAACACCTGCATTTGATCCCTTTACACAGATCTCTCTTTCCACCAGAGCTCTTTTTAATTTCTTTTAGAGTGTCTGAATCAGCAAAGCATTGGCATGACTGTAAAGGATGACGGTATTACAAAAAGCTTTCAGGTGCTTACAAAGTCCAGGTGTTACGCATAAAGGAAATAAATTACAATAAATACAATAAAACAGCATTTTGTCATGTTTGACAAAGCCTTTAAAATCATAGTGGGACCACTGAACTGTAATATTCTTACAAAATATCAGGACTGATAGGAAAGCAACTGGAAATGTCTGACAAGTTTGTTTGTTTGTTTAAAAGAAGTTGTAGAGAAGTAAAATCAGACATCAAAAAGGTTGAGTAATTTTGTAAAAAAAAAAAATTGGCATTAGGGGAAAAAAAAGATTGTATTCTATTTGGAAAAATAACTTTTTATATTGGCTTATATAGATGCAGGGTTGATTTTAAAATAAGTAAATAAATAAAGAGCTGCATCCCTGCTGTGTACACGTGTACACTCCCTCAATTACTTCTAGTTCTAAGCCAACTCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTCTCTCTCTTTCAGAAAACTTTTGTTGGTGAGACTATAGCCAATAACAACAAAGAATTTTATACAAAGGAAAAAAAAGAGTGATTAGGTATGTAAACTCTAAATGATGAAAGGGTGCAGAGTCATGATTACATAGATGAAGAGAATTATAAGAGAAACTGCTCTTTCTCTCTCTCTTTGCCACTTGATGATAGAGGCCTTGCGTTCTCAAAGGTCTGCCAAACACGGAGAGAGAAGAGTATTATGTTTGTTTACACCTGGAATTAAGATCCGTCTGTGGTCAAGACAAGTTGTTTATATCTGGTATTAATATGTCTCAAATGTGTCTTCTGTGACATATTTTCGCTCACTATGTCAGTGTGTTACTATGTGTTGAACCCAGTTTAAACCTGTGTTTAATAATGGGAATTTGTGATTTGGATTAATACCAGGTGTAAACAGGGTGTCAGCTGGTCTCCAGCACTTCACTTCTGAGATCCAAAGCTGTGCTGTTCTTGAGCGCTGGGTGAGTTAATCCAGGTGTTGGTGTAAGCATCAGTTGAAAAGTGTGTGGTTCAGCTGCAGCAATAAACCCTGGATTGTAGACTGGCCTCACTTTCACTTTGAAACAGGAAGTTGTCTGCTCTCGACCTTATTTTTCATTTCCATGGGCCTGTTTACACACTTCCAGCAGTGACACCTCTCTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTGCTGGGAACAATGAGTCACCAGATTTAGGGTTAATAGACTGCAACAAAATGCCTTGCCATAATTAAAACCAATCATGCTATGCTTAAACTCCCCCTGTCTGTCCTTACAAAGGTTTGTGTTTGTGTGTCTACATCTGTTCACACACATAAGAGAAATGTCATATTCCCTCTGGGGTCAGTAAGATTTTTTTTGTTTTGTTTTGGAAGTAGGGATGTAAATTTATATAAAGTCCCATAATCGATCATTGTTTAAATTAACGATCAATTAATCGATTTAATCGTTAACCTTAACCTCATAAATCTGAAGCGAGGTCCGCTACTAAGTTATCACGTTACATAACCACTTGCTCAACCAACACAAAATAGATGTCATTTTAAAGCTTAGAAGCTTGGCTTTACAGTGAATATAGGGAATATGACCATCAGCTTGAAAAAAATAACTGCTTTAATAACGGCCGACGTACATGTAAACAGTATACATGTGATGCTTTTGCGCCACGTTTTTGTAACTTCGTGAAACATTAGTCACATATCTTTATTTAGAGTAGGTCGTCTCAAACAAGTTCAAACTCAACCTAAGACAATGCTCAGATCACGGAGTGACATGAAATGCTGTTTGGCTAAAGCTATGGGACTTCCAGGATCTGATTGCATTGCAATCATGACTTAGGCTGTGTCTGAAATCGCCCTTATACCCTTAAATAGGGCACTATTTAAGAGGACAGCCATTTGTAGTGGTGTCCGAAACCATAGTGGACATTATCGAGTGCACTCATTCAATCCCACAATGCACTGCAATAACTAGTATTCAACCGATGTATGCTCAATGGCTAGATAATACCCATAATACTGTGACCTTCGCACGGGATGAATTCCCGCGTCTCACCAGAAGATGGCGCCTGCAGTTGAATCATCCCTCCATCCATTTTCCAAACCGCTGGTCCAATGTGGGTACAGCGTAATATCATACAAGTATAAATTCCTATTTAATTGATTATTAAATTGTTTAATTCAGGTTTATGCATGTTAGTTTCCATGACAGAGTTCAAGATAAATGTTTTCATTACTATAGGAGCTGCCAATTTGCTAAGTTTCAAATGATTATTAAACAGCAAGCACAATCTATACAAAAGTGACAGCTCTTCTGGCGCACTCAGTGTACGAATTCACTCACTCATTTTCATTCACTGCTTCAAGCGGACTATATTAGTGGAGTAATGTAGGGAATAGTAAATGAGTGTATAGGGGGCGATTTCGAATACAGCCTCTGTGTTTTCCATTGTCACTTGAAAGTTCTACCAATGGAAACTGGATCTTGTATGTGGTGGGTAAAAATGTCAAATGAGATCCTAAAGGTTTCTTATAAATAGCAATAAATGTTTGTTTGTTTGTTTTTTTTTTTTTTTTTTTTTAGAACATAATAGATAGTCTGCCAATGAAAGTCAAGCTTGAACCTGCTAGAAACCAGCTGCCATATTCCAAAACACCTTAAGCTGGATTTTTTTTTTCTCTCTCAAGGAATTTTAGAAGAAGCATCTGAGGCTAAATTGATACTTAAATTAAACTGAGACCTCCATTCAGTCTCCAGAGCTGTGAAAGAGCAGATGTGTTGGGTTCCTTCATAGTCCAGACACTGAATACACACACATCTCACACTGTCATCTGGCTGATTTACTTTTAGCGGCTATGTGATTGTTGTGTGCCTTTTTCCACCCTCCACCCTTCAACAGGGTGAGTGGGGAACAAAGGCAGGCCTGCAGGCCCAGGAGACATGACGTTAGCCCTGGCTCTCTGGAGCTCCTCCAGACTCAGAAATAGGTCAGGTTAGTAAAAATAGGCCCTAAAAAGGGAGGGTCAGCTGCTAACTCTCATTGCTCCACCATGCTTTTGTTTCTAAATGTCCACTGGCCCTAAACCCTCCGCAAAGTTCAAACATACCTGTATGGAAATTGAGCTGATGGCTGTTCCTTTTGGTCCTCAGAATATGGAGGTACCTCTGGAGCACTTCCTAATCATTGTGACTGTGTTCTTGGAAAGTGTCTGTTAAGAAGTCCACAACTTTCCTCTCGGAAGTGTATGTATTGTTTACTGAGGCAGATAAGACTATTTCCTCTTGATAAGTACACAGAAACACATTCACACAGTCCATTTGTTTATCTGCACCCCACCCCCATTAAGTGAGAATACAAATATTGAGGTCAGAGGAAAAGTCTTGACTCAGCATTGTTTTCCCCTCCTCTCCTTTCATTATTCCCAGAGGAAATTATCATTTCACAGGAGGCTTCATGAAGTTCTCACTAGAGTTCCATTGATGTGTTAAGTTTGTTGATGTTTCTTCAGAATTCCTTAGGGGAAATAAAAAATAGAAACAAATGAGATCACTGTTGTCCTAAAGTAAAAGTACAGTAGAGCTGTTCGAACAACGTGGATGGCGTAGCTTAGATAACTTGGATAAGTCTCAGAAAAGAAATATGAGAAATATTTAAGAAATAATATCAGGCTTGATTGCGTTGTGAAAATCTAAAGGAGACACATCTGAGATGCAAGAAAAGCAAACGTCTCTATTTATACCCATTTATTCTCATTGTTGTCTTGAAGACATAACTAACATTTTTAAAGATTTCTTTTTTTCTTGTCCCCATTTCTTATGAAAGTCTTCATTAGCTATCCATTTTATCTTGTCCGAAAAAATCTCAAATGAGATGTCAATTGTTTATTTATTTATTTTACCTACGGAAAATTTTTTCCTACACGTCTCTGTTTATTCTCCATTTACCATCAATGCTGCCTTAGAGACACAGTTTCAACAATGAGAACTAATTTGTTTTTATTTAATAATTGTACTCCATTCTTATGGAAGTATCTATTTGCTTTTTGTTTACTGTAATTGCTACATTAAATAGAGAGCAAATACAAACAAATAAGGTATTAAAGAGATATTTTTTTCTTCCTTCTTATGGGTCTGCATCTCCAAAGCAAAAGTAATTCAGGAGACCTGCTAGTTACCACAACTTAGATAAATGCGTGATTGCAAGTCAAAAATTCTAATTTAATGATTTAATTAAACCTTTTAATTTGCAAACAGTTTTTTTTTTTTTTTTTTTACATTATAATGTTGATTATTACATTAACTTAATATTGTTTGTAATTTACTCTCAAGTATCTCTCAAATATTTTTTTGAAGAAAAGTTGTAACTTAATGGAATTGTCTTGATAACTTTGGAAATTGGGCAGTGGATTTCTAGGACCTGTTAGTTTATAATGCTTTTAAGTATGACATTTAAAAGAGTTTCTGTATAATTTTGAAGTTTTTGTGGCTACCATTGTGCTGAAGAGTAGATATATGAAGGTAAAAACTGCATTGAGTCTATAAGAAGCAATGACTGCTCTAATGCCAGCGACAAGTAATACCTTACTTGTTCATTAAATTTACATGCTAAATAAGTTACATTTAGCATGTGCTATGATATCTGTGGGCTTTAACTGAAATAGTTGAGATTAATTGGTTACAGGGCAAAAATCAAGTAGTTGGACTGAGTAATCAACTTAAAAATTTGTGTTTGTTACAAATTAGTAAGTTCCTCTAAATCACTTTAGTTTGTTGGTTAAACATAATTTTATTCAAAGTTGTCATAGCTCAAAAAGATTGATGCAAACATTATTTTCTGCTCTTACCTCCATCCCTTTATTTCACATAACCTCTTCCTGTACTTGGAGGACCTTTCTAGACTGTTTTTCTGCATACATCTCCATCTGTCGCAATATTTTCTCAGTGCGGTGAAATCACTCTCTATTACAAAACACCTCCATCCACCTCCGACTCACAGTAGCTTATCAGACTCAGACGGAACAAGATAAGAGCAGGAACCGTTGCCAGGCAACTGTGGTTACAATAAAAAAAGACAACGTTTATCAGAGACGACTCCTGACACACTTATTCAGTCTCTCAAATGCTTCTCTCACAGCCCAGCTTCATTTGGTCTGCTGGAGAAGAGATGAGCTGTCATTATGGACAAACACTGATGATTCGCTTAGAAATGTCAATCACAAGGTTGAAGGAGAATGCCATATCTACAATACCGATAAAATTATATAAATTATAATTGCTCAGATGTTGCTCTTTCATAGCTCAGAAGTTTTAAATGGAGAGTTACAGTATGTTTTGTTAAAGTACCACTATTTTCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU32591 True 6871 lncRNA 0.52 2 8277202 8284097

Neighbor

gene id symbol gene type direction distance location
CI01000004_08252556_08257067 NA coding upstream 19109 8252394 ~ 8258093 (+)
CI01000004_08243282_08245264 NA coding upstream 31833 8242979 ~ 8245369 (+)
CI01000004_08200962_08208539 PPP2R3A coding upstream 66498 8199371 ~ 8210704 (+)
CI01000004_08177656_08183324 PPP2R3A coding upstream 93607 8177565 ~ 8183595 (+)
CI01000004_08108419_08111331 MSL2A coding upstream 165536 8107726 ~ 8111666 (+)
CI01000004_08302613_08354790 FNDC3BA coding downstream 18516 8302613 ~ 8354795 (+)
CI01000004_08382042_08402126 PLD1A coding downstream 96375 8380472 ~ 8402514 (+)
CI01000004_08414451_08436256 NA coding downstream 130219 8414316 ~ 8439933 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding downstream 174901 8458998 ~ 8503992 (+)
CI01000004_08507941_08515797 SLC2A2 coding downstream 223844 8507941 ~ 8516308 (+)
G28801 NA non-coding upstream 243490 8028250 ~ 8033712 (+)
G28800 NA non-coding upstream 251304 8025491 ~ 8025898 (+)
G28797 NA non-coding upstream 293425 7983481 ~ 7983777 (+)
G28791 NA non-coding upstream 449520 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 455185 7821817 ~ 7822017 (+)
G28834 NA non-coding downstream 81598 8365695 ~ 8365921 (+)
G28835 NA non-coding downstream 84764 8368861 ~ 8369073 (+)
G28843 NA non-coding downstream 126629 8410726 ~ 8411220 (+)
G28848 NA non-coding downstream 186648 8470745 ~ 8471884 (+)
G28849 NA non-coding downstream 243348 8527445 ~ 8527675 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 620819 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1702781 6570771 ~ 6572667 (+)
G28302 NA other upstream 1775115 6470028 ~ 6502087 (+)
G28165 NA other upstream 2544201 5732589 ~ 5733001 (+)
G27805 NA other upstream 2903399 5372825 ~ 5373803 (+)
G28859 NA other downstream 315138 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 692341 8976254 ~ 8980984 (+)
G30797 NA other downstream 2213279 10497376 ~ 10497788 (+)
G31710 NA other downstream 3353154 11637251 ~ 11642400 (+)

Expression


Co-expression Network