gid8a (gid8a,LOC107549514,LOC107549954,LOC107560896,LOC108266002,LOC100691864,LOC108412511)


Basic Information

Item Value
gene id gid8a
gene name gid8a,LOC107549514,LOC107549954,LOC107560896,LOC108266002,LOC100691864,LOC108412511
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11530805 ~ 11534404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246560.1
ataaaataaataattccatGTTCACTGTGCCCCTGATCTGGCAACCTTGGCAGCTTTGCCACAGCAACCGTGACGCAAATATTCCGACCAATCACTTACCTCCTCTCAAGTCTCGTTCAGAGCTCTCCTGTGTTATCGCGTGATCTTTGCTGAGGCCCACCGCTATTTATAACCGTAAACATACATCCATGATGAGTTATTCAGAAAAGCCTGAGGATATTACAAAGGAGGAATGGATGGATAAACTGAATAATGTGCACATTCAGAGGGCGGATATGAACAGGCTCATTATGAACTATCTAGTAACAGAGGGATTTAAAGAGGCTGCAGAGAAGTTTCGTATGGAATCTGGGATTGAGCCGAATGTGGATCTGGACTCTCTGGATGAGAGGATAAAGATCAGGGAAATGGTTTTGAAAGGTCAGATCCAGGAAGCCATAGCTCTCATTAACAGCCTCCACCCAGAGCTCCTTGACACCAATCGATACCTCTACTTTCACCTTCAGCAGCAGCATCTGATTGAGCTCATCCGTCTGCGGGAGACCGAGGCGGCGCTGGAGTTTGCGCAGTCACAGCTGGCCGAACAGGGAGAGGAGAGCAGGGAATGTCTTACTGAGATGGAGCGAACCCTGGCGCTGCTCGCCTTCGATAACCCTGAAGAATCGCCGTTTGGAGACCTGCTCAACATGATGCAGAGGCAGAAGGTGTGGAGCGAGGTGAATCAGGCTGTTCTAGACTATGAGAACAGGGAATCTACTCCAAAATTAGCAAAGCTGCTGAAGCTTTTACTGTGGGCTCAGAACGAACTGGACcagaaaaaagtgaaatactcCAGAATGACAGACCTCAGCAAGGGCACCATTGAGGACCCCAAGTAGAGACTGTAATCCACATGGACACGTTTGAATTTTTTGCTCTAATTTATGAACAGTCAGTGACTGGATAGGAAATATGAatctatatataatgttttcttttcatgatGCCTCTATAAAAAGTAACTTAAACAAcattatatgattttattttaaacaaaattatactgattgaaaactgtaatcctacatttttattgtaatctACCATTTACTATGCTGGTAGCCTATTTTCTGAAAGACATGGAATATTCCTATGGTactgtttttgctcattttatgtctgttaaatattttattttatgttgttgtttttgttttttatttttttttcaacctctTCACTGGTTTCACATACAGTAATATGTCCTCATGCTTATATTAGGCTGTTTTTGAGGGAAATATCAGCTCCtgaatggaaagaaaaagatatCTATCTTTATTACTGATCCAACgacttcattttttatttttttttatagacgcTAATAATGTAAACGGTGTTGAGTTTTAGACCTTCATTACATAAGCTATTGGAATTAGAaaacaataactaaaatattgtCGTTACTTAATGCCTTATGTTTATGATTTTTGTCTTTcgtttttgttcacattttgTACTGCTTGTTTGGGATAAAGTTGATTTCACAGTAGGTTTTGTTTTACTGAATCATATTTTTTGTAAGACAGAGTCTCCAGATTCCACAGTGATAAAAGATTTAATACAGAATGATGATAAGTGAA

Function

symbol description
gid8a Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Orthologous to human GID8 (GID complex subunit 8 homolog).

NR:

description
PREDICTED: glucose-induced degradation protein 8 homolog

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K23338 GID8; glucose-induced degradation protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246560.1 True 1622 mRNA 0.39 5 11530805 11534404

Neighbor

gene id symbol gene type direction distance location
si:ch211-196c10.13 LOC107549955 coding upstream 1233 11528888 ~ 11529572 (+)
ythdf1 ythdf1,LOC107678560,LOC108437571,LOC107549989,LOC107668064,LOC107549491 coding upstream 9317 11513577 ~ 11521488 (+)
nkain5 LOC107668065,LOC107745763,LOC107731206,LOC107549956,LOC107695305 coding upstream 18615 11506832 ~ 11512190 (+)
uckl1a uckl1a,LOC107549990,LOC107668066,LOC108437574,LOC103355333 coding upstream 47126 11468421 ~ 11483679 (+)
samd10a samd10a,LOC107731152,LOC107668017,LOC107745835,LOC107695303,LOC108437575 coding upstream 62849 11453581 ~ 11467956 (+)
dnajc5aa dnajc5,dnajc5aa,LOC107668106,LOC107745759,LOC107678568,LOC107549988,LOC107549528,LOC108412505,LOC103036084,LOC105906402 coding downstream 6991 11541395 ~ 11548885 (+)
tpd52l2a tpd52l2a,LOC107731215,LOC107668052,LOC107549984,LOC107745757,LOC107678582 coding downstream 14820 11549224 ~ 11557340 (+)
dnmt3ba LOC107549981,LOC107667992,LOC107549566,LOC107678654 coding downstream 104777 11639181 ~ 11651383 (+)
LOC122350221 LOC107745754,LOC107549981,LOC107731130,LOC107678654,LOC107549566 coding downstream 117228 11651632 ~ 11659894 (+)
mapre1a mapre1a,LOC107549980,LOC107731276,LOC107550524,LOC107680003,LOC107668120 coding downstream 126177 11660581 ~ 11664178 (+)
G63052 NA non-coding upstream 7894 11518410 ~ 11522911 (+)
G63024 emilin3a,LOC107731182,LOC107668027,LOC107745820,LOC107550125,LOC107549958,LOC107695222 non-coding upstream 83534 11447033 ~ 11447271 (+)
G62996 NA non-coding upstream 136656 11351311 ~ 11394149 (+)
G62909 NA non-coding upstream 257947 11157008 ~ 11272858 (+)
LOC122350248 NA non-coding downstream 81063 11615467 ~ 11620167 (+)
G63094 NA non-coding downstream 84615 11619019 ~ 11619230 (+)
LOC122350251 NA non-coding downstream 215156 11749560 ~ 11752585 (+)
G63158 NA non-coding downstream 236377 11770781 ~ 11797971 (+)
G63173 NA non-coding downstream 320982 11855386 ~ 11855620 (+)
plp2a NA other upstream 85797 11441969 ~ 11445008 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other upstream 219372 11294805 ~ 11311433 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other upstream 333002 11192724 ~ 11197803 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other upstream 979014 10536143 ~ 10551791 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other upstream 1052006 10431802 ~ 10478799 (+)
slc17a9a slc17a9a,LOC107731251,LOC107668105,LOC107549987,LOC107745761,LOC107549524 other downstream 96 11534500 ~ 11541121 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other downstream 27877 11562281 ~ 11564408 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other downstream 282653 11817057 ~ 11820659 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other downstream 319190 11853594 ~ 11857421 (+)
LOC122350223 NA other downstream 513105 12047509 ~ 12050968 (+)

Expression


Co-expression Network