G37015


Basic Information

Item Value
gene id G37015
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3046107 ~ 3052073 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42026
ACCATTTTGCGCATCCGGTCAAGCACGGAGTCTACAATCTCTTTGCCAATGGTATAGTGACCACGAGCATAATTATTGGCAGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGTACAGCTGTCGATAGTGTCCGTTACGGATCTCATCTGCATTTCAACAACTGTCGGCTCCAGATCAATAAACACTGCACGAGGAACATACTTCCCAGCACCAGTTTCACTGAAGAAAGTGCCAAAAGAAGAGTCAACCAATGAGCTTCCATCATTAAGGATGGTCCCATCTGGCTGGAAGCCATGCTCCAAACAATACAACTCCCAGCAAGAGTTACCCATCTGGATACCTGCTTGACCAATATGTATGGAGATGCACTCCCTCGCCATGCTCCAAACAATACAACTCCCAGCAAGAGTTACCCATCTGGATACCTGCTTGACCAATATGTATGGAGATGCACTCCCTCTGGTTTGACCAAAACAAGCACAAACACAATCACGACTGCAGTGAAGTGGTTAGGCAGTAACACAATGAAGATGACAATCAATAAACTCACCATTGTGCTCAAGTATCACAGCAAGTAGGAACTAATTCAGAGCCTTTAAACCCTTGAAATATAAAACACAAACTAAGCTTCAAAAAGATATTAACTGTTGCCTTTTTAAAAGAAATCACCTCACCTCCACAGCCACACCAAACCACCCACCTGATCTTCATTTATACAGGTGTCAAATTAGGGTGTGGCTTTTAATGAACTCTACCTGA

Function

NR:

description
rab-like protein 2A isoform X1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42026 True 764 lncRNA 0.44 3 3046107 3052073

Neighbor

gene id symbol gene type direction distance location
CI01000005_03011542_03041267 CUL9 coding upstream 4033 3011542 ~ 3042074 (+)
CI01000005_02983417_02988517 NA coding upstream 57566 2983417 ~ 2988541 (+)
CI01000005_02867301_02880721 APMAP coding upstream 164485 2867301 ~ 2881622 (+)
CI01000005_02846022_02853830 PPM1G coding upstream 192277 2845685 ~ 2853830 (+)
CI01000005_02772221_02779729 FAM120B coding upstream 266133 2772112 ~ 2779974 (+)
CI01000005_03054461_03082529 NA coding downstream 2388 3054461 ~ 3082784 (+)
CI01000005_03097346_03117235 ZNF318 coding downstream 44873 3096946 ~ 3117377 (+)
CI01000005_03167707_03171889 DNPH1 coding downstream 115634 3167707 ~ 3172020 (+)
CI01000005_03317813_03368502 TJAP1 coding downstream 264221 3316294 ~ 3369384 (+)
CI01000005_03423676_03430312 NCOA4 coding downstream 371603 3423676 ~ 3430481 (+)
G37173 NA non-coding upstream 90576 2954656 ~ 2955531 (+)
G37165 NA non-coding upstream 109901 2935917 ~ 2936206 (+)
G37162 NA non-coding upstream 122853 2923016 ~ 2923254 (+)
G37161 NA non-coding upstream 124138 2921613 ~ 2921969 (+)
G37158 NA non-coding upstream 129469 2916439 ~ 2916638 (+)
G37019 NA non-coding downstream 108873 3160946 ~ 3161256 (+)
G37208 NA non-coding downstream 148923 3200996 ~ 3201209 (+)
G37214 NA non-coding downstream 155422 3207495 ~ 3207730 (+)
G37222 NA non-coding downstream 163991 3216064 ~ 3216264 (+)
G37233 NA non-coding downstream 183899 3235972 ~ 3236283 (+)
G36291 NA other upstream 1385075 1659733 ~ 1661032 (+)
G36223 NA other upstream 1508303 1503143 ~ 1537804 (+)
G35533 NA other upstream 2522326 491908 ~ 523781 (+)
G37392 NA other downstream 670671 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 1683273 4735346 ~ 4737082 (+)
G39930 NA other downstream 3945471 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 4545916 7600541 ~ 7602964 (+)

Expression


Co-expression Network