CI01000006_02034527_02040359 (FAM53C)


Basic Information

Item Value
gene id CI01000006_02034527_02040359
gene name FAM53C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2034527 ~ 2041268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02034527_02040359.mRNA
TCTCTACTTCATCGTCAGAGCCCCGAAACCAGCCGGCCCACAGATGGATTGATGCCTGAGAGCAGTTACTGGCAGCTCTGCCCTCCGTCGAAGGCCAGCCTGCAGGGGGTGCTCAGCTCCAGCTTCCCCCCCGGCCCCGTGCCCCTGGGTCCTCCAGAAAGCCACCTGCCGGAGGGGGATGCCCTGAACCGTCCGCTCGCCCCTAGCACCTCTGTGACGGACCTGTCTTTTCCCGGGCCTCCCCCTCCCCCCCCGCCACCCCCCAAACGCCACTGTCGTTCGCTGTCTGTACCAGAGGACCTTTCACGCTGCCGGTACACCTGGCGCCCGAGCGCCTCCAAGGTCTGGACACCAGTGAACCGCCGATGCCACAGTGGAGGGGGCGCGGGGGGGCCGTGTCCACTGCGTGCCCCCAGCTCCTCGCTAAACTCCTCGCTGCATTCTTCTTCCAGCCCCACCTTTTTCAGTCTGGCCCTTTCCCCAGATTCCCCACTGCCGTGGACTTTCCCCTGGGACCCGAGTGACGAAGCTGCCGCCCAGTTCCTGCCGCCACCTCCGGTGCCCCCACAAATCACGTCTCACCCTCCAGCGGTGCCCGCCTCGCCCTCGTCCGCCTGCAGCACTCCGTCTTCGGTGCGCCGTGCTCTTCCTCCTCAACTTCCACGGTGCCATTCTCAGCCCTGCGACCTTCTTCTGCTCAAACCTGGCCTAAAACGCCGCAGGGACCCGGACAGACCATGTGCACGGCCTGTGCTAGACTTCGCCAAAATGACACAGACTCGAAGCACAGACCCTCTTAGTTATATGGAACGTGGCCGATTGGCCTGTGGGGGTGATGTCTGTATGGGCCTTGAGCCTTTTTTTGGAGACTTCAGAGGCTCATGTTCACCAGCTGAAGGCCTGGGTAGGACAAGTATTGGGCCGTTAAGTGAAAGTGACGAGGAGGAGGAGAGAGAGGAGGAGGACCCTGAAGAGCGTGACGGAGGACAAACTAGCGTGTTTGAAAGGGATTGTACTGAACTAGATCTCACCCTCATTGAGGAGAACTGAAAGTTATCTGGGGAAGATCTCCTTTCCCCCCCTCACCTCCACCGCCAGCATTCAGCTCTGCACCACCTGCTACCTTACACTGGCAGGCCTCTCAGGAACCCTGCTGCCCTCGCACGAGGCGCACAGGCGTAGACGCCCATTAATGAAGACATGCCGACTACTATCATATGCAGGCAGTCACAGACGCTGACCCATCAACATTGTACATTCCAGAATGAGTTTGCTAAGACAGTCTGAAGGATGCAAATATTTCAAAAAGGTTTTATGTGTATCGGACGTCCTCTTAGAATTCATCTTCAAACTGACAGAACGTAACTGGAGGCGAAAAGCTTCCCGCTTCTTTCTTTTCTTGTCTTTCCTCTTGACTTCTTTTGATAGTAAGAATAGACTTTCTTGGATGATGGTTATAAATATCAGTGTTTTGTTCAGTTGAAATATAAAAGGGCAGTATGACATAGCAGTATTTACTCTGCAGACCTTTATACTTCCTGACGAAGGTCCATCTAATTCAACATAAGCCTTAAGATGCCTGTTTTTTTTCTTCCTCTTAATCAAAAGATTCCTCAAGGAAATTAATTGTGTACTGTAGCTGTTGTTCTGTTTTTTTTTTCTTCTTTTTTTTCCTGCAGACTTTTTTTTTTTTTTTTAATCTGTACAATGCATTCCTCTAAAACTGAAATGTGTATACATTTATTAATGCACTGTATTTGGGACATTTAGAAAGAAACAATGAAAGCAACCACTGTATTCTGAAGGCACATTGTTATACTGTATTGTACAGCGAGTATTTGTTCAAATAAGTTGTGTAAAGATGGTAGCTTGAAGGTTGGAGACAGGCTATTTCTGTCATTTAGAGTTTTTTTTTTTTTTATTGTATGTGTGATCAATTCAGACTCAGTTTATGTAAAA

Function

symbol description
fam53c Predicted to be involved in protein import into nucleus. Predicted to be active in nucleus. Orthologous to human FAM53C (family with sequence similarity 53 member C).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02034527_02040359.mRNA True 1959 mRNA 0.51 4 2034527 2041268

Neighbor

gene id symbol gene type direction distance location
CI01000006_02023656_02025259 SLBP2 coding upstream 8783 2023656 ~ 2025744 (+)
CI01000006_01965496_01966308 NHP2, NOLA2 coding upstream 68173 1965496 ~ 1966354 (+)
CI01000006_01964013_01964347 GRPEL2 coding upstream 70070 1964013 ~ 1964457 (+)
CI01000006_01943602_01960621 AFAP1L1B coding upstream 73906 1943602 ~ 1960621 (+)
CI01000006_01890066_01892979 RAB39BB, RAB39B, RAB39A, RAB39BA coding upstream 141404 1889713 ~ 1893123 (+)
CI01000006_02043266_02045032 NA coding downstream 1998 2043266 ~ 2045122 (+)
CI01000006_02116526_02125887 ADRA1BA, ADRA1B coding downstream 74650 2115918 ~ 2126120 (+)
CI01000006_02134157_02143363 NA coding downstream 92889 2134157 ~ 2143760 (+)
CI01000006_02157297_02159922 FABP6 coding downstream 116029 2157297 ~ 2159968 (+)
CI01000006_02181904_02185719 NA coding downstream 139642 2180910 ~ 2186292 (+)
G41281 NA non-coding upstream 7962 2026350 ~ 2026565 (+)
G41280 NA non-coding upstream 8284 2025932 ~ 2026243 (+)
G41246 NA non-coding upstream 11651 2016130 ~ 2022876 (+)
G41276 NA non-coding upstream 18881 2013266 ~ 2015646 (+)
G41242 NA non-coding upstream 110583 1918932 ~ 1923944 (+)
G41302 NA non-coding downstream 44367 2085635 ~ 2130958 (+)
G41328 NA non-coding downstream 90725 2131993 ~ 2132347 (+)
G41347 NA non-coding downstream 121288 2162556 ~ 2163031 (+)
G41360 NA non-coding downstream 157797 2199065 ~ 2225977 (+)
G41344 NA non-coding downstream 226061 2267329 ~ 2269264 (+)
G41170 NA other upstream 338706 1692065 ~ 1695821 (+)
G40768 NA other upstream 1541501 488407 ~ 493026 (+)
G40767 NA other upstream 1551192 360009 ~ 484185 (+)
G40772 NA other upstream 1555333 475465 ~ 479194 (+)
G41424 NA other downstream 604394 2645662 ~ 2660570 (+)
G41591 NA other downstream 794899 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1687962 3734554 ~ 3736035 (+)
G41996 NA other downstream 3075938 5117206 ~ 5124149 (+)
G43896 NA other downstream 3728821 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019700 FAM53C coding NC_007132.7 CM002905.2 30256952 ~ 30284404 (-)