G41242


Basic Information

Item Value
gene id G41242
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1918932 ~ 1923944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46830
GGAGACAGAGAGGGTTTATTCATGGGTAGAAAGGATGGCTATCGGTTTAAAAATCAATTAGTGCCCTTTTCTTTACACACAGTCCTGAAAATAACCAGAATGGAAAAAGCCAGAAAATAACATAACTCGTTTTGAGAGATGGCATAGTAGAGACAAAACAGCAAATGTGACACATTTTGTCATAATGGAATTCAGTTTTTCACAGTGATTGAATATATACATTCCCAAAGCTTGACTCGTTACACTGACACTAAACAAAGGAAAATACAATGGTTGCAAAAGCCTTATTATAACATATTTAGTCAAAGTCAAAAGGATACAAATGAAATATGGAATGTAAAGGAAGACATTGTCAAGAGGCAATCCCAGTTTTAGTTTCTGAGGTGCTACATTTGGCGAGTTAGTTTGATAATTGTTCTCTGGATTTGTGATGCAAATACTCAACTTTTCAACATGGTCACTTTTTTTTTTAGGATTGAATTATCTAATTAATCTCAGACTAGCTTTTAATTCAGAATACAGTTAGGAATGTCATAGCGGCCAGACCAAAATTCTCCTTATTTTTATTCTTCTTATTTTAATTTTTTTTATTGGAGAAAAATCATTGGGTTGCCTGAAAGGTTAAAGCCAGGAGTTGAAAGAGTTTGAAGGAGTATTTGTTCAAAGGTCAGCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTTTCTTTCCACAAAATGAGTGCATGAGGTATAAATACAGCATTAAGTTGAGTTCATCCTCAGAGTGAAATAGATGTTGTAGTTTAGTTCTATCCCAGAACAGAAATATATACAGGATATTATGGACAGCAGCTGTGAAAGGTTTTGACTGATGTGCAGAAAAGAGCTGGTAGAGCAGATGGGTCCAGGACAGGGAGGGGGTTTACCAAAACCTTCATCACACTTTTCCGGGAATGTAGTTCCGGTCAATACTTTCTTCCTGCAGGAACATGTGAAGACAGCGTTCGTTCTG

Function

NR:

description
PREDICTED: PDZ and LIM domain protein 5-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46830 True 1004 lncRNA 0.36 2 1918932 1923944

Neighbor

gene id symbol gene type direction distance location
CI01000006_01890066_01892979 RAB39BB, RAB39B, RAB39A, RAB39BA coding upstream 25809 1889713 ~ 1893123 (+)
CI01000006_01842317_01859671 NA coding upstream 57098 1842317 ~ 1861834 (+)
CI01000006_01814388_01822488 TNFSF10L3 coding upstream 96061 1814388 ~ 1822871 (+)
CI01000006_01778632_01788481 RIR1, RRM1 coding upstream 130451 1778632 ~ 1788481 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding upstream 179607 1712959 ~ 1739325 (+)
CI01000006_01943602_01960621 AFAP1L1B coding downstream 19658 1943602 ~ 1960621 (+)
CI01000006_01964013_01964347 GRPEL2 coding downstream 40069 1964013 ~ 1964457 (+)
CI01000006_01965496_01966308 NHP2, NOLA2 coding downstream 41552 1965496 ~ 1966354 (+)
CI01000006_02023656_02025259 SLBP2 coding downstream 99712 2023656 ~ 2025744 (+)
CI01000006_02034527_02040359 FAM53C coding downstream 110583 2034527 ~ 2041268 (+)
G41263 NA non-coding upstream 195 1918405 ~ 1918737 (+)
G41262 NA non-coding upstream 2021 1916634 ~ 1916911 (+)
G41225 NA non-coding upstream 79050 1838142 ~ 1839882 (+)
G41165 NA non-coding upstream 418768 1499912 ~ 1500164 (+)
G41276 NA non-coding downstream 89322 2013266 ~ 2015646 (+)
G41246 NA non-coding downstream 92186 2016130 ~ 2022876 (+)
G41280 NA non-coding downstream 101988 2025932 ~ 2026243 (+)
G41281 NA non-coding downstream 102406 2026350 ~ 2026565 (+)
G41302 NA non-coding downstream 161691 2085635 ~ 2130958 (+)
G41170 NA other upstream 223111 1692065 ~ 1695821 (+)
G40768 NA other upstream 1425906 488407 ~ 493026 (+)
G40767 NA other upstream 1435597 360009 ~ 484185 (+)
G40772 NA other upstream 1439738 475465 ~ 479194 (+)
G41424 NA other downstream 721718 2645662 ~ 2660570 (+)
G41591 NA other downstream 912223 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1805286 3734554 ~ 3736035 (+)
G41996 NA other downstream 3193262 5117206 ~ 5124149 (+)
G43896 NA other downstream 3846145 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019027 snx12 coding NC_007132.7 CM002905.2 30470809 ~ 30488267 (+)