G41225


Basic Information

Item Value
gene id G41225
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1838142 ~ 1839882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46812
CCTGGACACACTGACATACCACGGTTTTGAAGGGAATAACACCACCAAAATGAATCTGCATCACTTTCACCTGGCAAAATTTGGATTTTGCACACTGATCTTGCTAGTTCTGATGTATCAGGTATCTACTGTGCCATTAGCGACTTCTGAGGTGCGATCGGATCTTCAGTCATCACATATACTGCACCGCAAGATACGAATGTCCCCTTTGTGGCGAATCATGGGGTTCAAACCATATGGAGCGTACTGCCATGACAACATAGAGTGCACTACAGGATTATGCAGGAATGGTCATTGTTCTTTTAATGAGCCTGTTCATTCATAGCGGAGTGGAAGACTGAAATATATTCATTTATGAGTCAACCCAATTAATATATACTATTTTATGCCATAGCAGTGTGTGAAGGCTATGTTGCAAGCACTTTAATTTTTTAACTGTATGTAGTGCAGTATTATGTAGTGCATATGGAGAAGTTTCACTTGAAAAGTTACATTGGTTTCACTGTAGATGTTTTATATTCAAGACATTTAATAACACTATTTATGGTCATTATCATATTGGGGTTTGTATTTGACTTGCCCCAAACTTTAATTCTACAATACAATACTGTAAGTGCATTGTAATTAAAAAGCTGTATTAATCTGTAAAAGCATCTGTTTTAATTTGTAGACCATTTTAAGAGCTGTAATATATATGTATAAAATAATGTGATATTTGATATAAAGTACTGTATTTGATATGCTATGTGGGCATACAGAAGGCCTCAGTAGTGACACTTAAAATCAATACTAGGCATAGTGCCTGTAAGAGAACGTGCACAGTTGCACACATCTTTCTCATGATGGCTTGAGTTCTCTGAAAAGCCAGTTCTAATGACAAAGGCCCCTGAAGTTAGCAAGAGGAGTATTTGCACAAGAATGTACTGTAACAGACCGATGTCATTGTACTGTGAACGACCTCCACATGTACCCAGATTGCATGTCCTTTTCTAACATGAAAGAGCAAAGTTTATGTTTGTCAAATAAAACTCTAAAAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU46812 True 1039 lncRNA 0.38 3 1838142 1839882

Neighbor

gene id symbol gene type direction distance location
CI01000006_01814388_01822488 TNFSF10L3 coding upstream 15271 1814388 ~ 1822871 (+)
CI01000006_01778632_01788481 RIR1, RRM1 coding upstream 49661 1778632 ~ 1788481 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding upstream 98817 1712959 ~ 1739325 (+)
CI01000006_01680551_01688030 PGAP2 coding upstream 149487 1680551 ~ 1688655 (+)
CI01000006_01666458_01679245 NCBP3 coding upstream 158225 1666241 ~ 1679917 (+)
CI01000006_01842317_01859671 NA coding downstream 2435 1842317 ~ 1861834 (+)
CI01000006_01890066_01892979 RAB39BB, RAB39B, RAB39A, RAB39BA coding downstream 49831 1889713 ~ 1893123 (+)
CI01000006_01943602_01960621 AFAP1L1B coding downstream 103720 1943602 ~ 1960621 (+)
CI01000006_01964013_01964347 GRPEL2 coding downstream 124131 1964013 ~ 1964457 (+)
CI01000006_01965496_01966308 NHP2, NOLA2 coding downstream 125614 1965496 ~ 1966354 (+)
G41165 NA non-coding upstream 337978 1499912 ~ 1500164 (+)
G41128 NA non-coding upstream 339109 1420533 ~ 1499033 (+)
G41134 NA non-coding upstream 378480 1451243 ~ 1459662 (+)
G41087 NA non-coding upstream 452629 1298166 ~ 1385513 (+)
G41081 NA non-coding upstream 546637 1290577 ~ 1291505 (+)
G41262 NA non-coding downstream 76752 1916634 ~ 1916911 (+)
G41263 NA non-coding downstream 78523 1918405 ~ 1918737 (+)
G41242 NA non-coding downstream 79050 1918932 ~ 1923944 (+)
G41276 NA non-coding downstream 173384 2013266 ~ 2015646 (+)
G41170 NA other upstream 142321 1692065 ~ 1695821 (+)
G40768 NA other upstream 1345116 488407 ~ 493026 (+)
G40767 NA other upstream 1354807 360009 ~ 484185 (+)
G40772 NA other upstream 1358948 475465 ~ 479194 (+)
G41424 NA other downstream 805780 2645662 ~ 2660570 (+)
G41591 NA other downstream 996285 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1889348 3734554 ~ 3736035 (+)
G41996 NA other downstream 3277324 5117206 ~ 5124149 (+)
G43896 NA other downstream 3930207 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019709 NA non-coding NC_007132.7 CM002905.2 30651065 ~ 30658560 (-)