CI01000006_01666458_01679245 (NCBP3)


Basic Information

Item Value
gene id CI01000006_01666458_01679245
gene name NCBP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1666241 ~ 1679917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01666458_01679245.mRNA
ATATAAATACATTACATCCTAAATATGAATGTTAGTGCATGTATAATCTGCTTTTGCTTTAGTGAAAGAGGGCGGGTCACACTCTAGCAGCGACCGTCTGCTGGGCGGCGTGTGTGTGTGTGTCGCGAGGCTCAAGCGCAGTGTTAGCACTGCTAGCGCGAGGCTCCATTCACTTCATTGAGAGTTAGCCGTTAGCTCGCTTTTAGATTGAGTGAACATGGCGGCGGTGCGCAGCCTGCGGGTGTCTGTGAAGTCCGAAAGCGCGTCCGATCGGTCAGAGTCAGACTCCGAATCAGACTCGGATCGAGATGCTCGGGAAGCGGAACCCATGGAGGTGGAGGAGGGAGAGCTGGAGTCCATACCTGTTCGCCGAAGTTTAAAGGAGCTGTTGCCGGACACCAGTCGACGCTATGAAAATAAGGCTGGCACCTTTATCACTGGAATCGATGTCACGTCTAAGGAGGCCATTGAGAAGAAGGAGAAGCGAGCAAGAAGATTTCATTTTAGTGCTGAGGAAAATCTGGCCCAGAGGAACGTTATTCTGGACCGGGATTTGTTGAAGAAAGCAATCCCAAAGGTGCGTCTGGAAGCCCTACACATGAGTGGAGTTGATGACATGAGCACTCAGGATGTTTTTGGCTACTTTAAAGAGTATCCACCTGCCCACATTGAGTGGATAGATGACGCTTCCTGCAACGTGGTGTGGCTAGACGACATCACTTCAACCAGAGCTCTCATTAACTTGAGTCGAATACCAGACAAAGAAGAGGTCACAAACACAGACTGCTTGAAACCCTCTGAACTTCCAGTCCAGCCGCAGAAAGAGCGAGAATCTCTCCTCCGGAATGATCTGCGGCCTACAACCAAGCCCTTCAAAGGCAACAAGCTGTTCTTGCGCTTTGCCACCCAAGATGACAAAAAGGAGATGGGTGCGGCCAGGAGAAGTCGGTACTACATGAAATATGGGAATCCAAACTATGGCGGCATGAAAGGCATTCTAAGTAACTCTTGGAAACGGAGGTATCACACACGGAGAATCCAGCGTGACATTCTGAAGACCAAAAAGCCTCTGATTGGAGACAGTATGGGACACACCCCACCTTACACTCATCGACACTCTGATTCAGATGAGATGGACTACGATCTGGAACTGAAAATGATCTCAACGCCTTCTCCTAAAAAGAGCATGAAGATGACCATGTATGCCGACGAGGTAGAAACCAACCTTCGCAGTCTCCGAAACGCAGTATCTCGGAGAGAGCCTTTGACTGACGTGCGCAGCCGACTTGGTGTAGCCAAACATGACAGCCGTAGCCTGTTCTCAGAGTCCTCGAAAGACAAGAAAACAGGGGGCTTGTGGAGCCGTCTCGGCCCATCTCACAAGGACAGTGGAGACGATGACAAGTCTTCTTCCCGAGCGTCTTCCTCAAGAGGAATAAGGCGACGAGATGACGAGGAATCTGACGGAGTTGAAGATGAAGAGGATGATTCTCAGCTGCAGAAGGTGTGGGGAGCAATGATCAAGCAAAAAGAGCAGCAGTCCAACAAGATGAAGAAAAGCCGGCTGGACAACCTGCCCTCGCTGCAGATCGAGATCAGTCGAGACAGCAGCAACGGCTCGGACAGTGACTCCTGACTGACTACTACTGTAGGAAGTGTGGGAATCGGAGAAATGGTGAATGCTGTGGAAGAGAGCTGGAGGTCATCTCTAATAGACTGGGCCAAGAGACCCTAAACATTCCCACACTCCCACCTCTTGCTTGTCTTCAGACTTTGCAGATGTTCTGTTTTGCCCTCTCTCTAGAAACTGATTTTGAGGGTGCTATTTGGAGTAAGAGAGGGCAGATTTTTTTGTTTTTGTCATTTCAAAGAAAGGGCAGTGGATGAGTCCCTTTTTTTTTTTTTTTTTCTTCAAAAGAAAATTAATGGATTGTATTTAACACACATTAAGGGGCCCATTTTAAATATACAGAGATGCACCATGTTGTCAAACAGTTGCTTGGAAGCAATGTTATCAGATGTCTATTAGCAATACATTTTCTTAATTTTGTCAGTGGTTGGTTTGTTCATGTTACATTATTAAGATTGAAATATCACTGTGGATTTGATGTCGAGAACATAAGGCTGGTCTGTTTTTTTTCCCCCATCTGGTGCAAGCATTATGGATCAGTGCTTCATTGTATACACAGTCCTATGATAGGGACAAATAATGTAGCCAATGTAATGATAATTTTTCCCAAAGGAATGGCCTACATTCCCTAAATATATGTGGTCAGTGAAACATACAAGAATACGCATTGTGTGTTGA

Function

symbol description
ncbp3 Predicted to enable RNA 7-methylguanosine cap binding activity and mRNA binding activity. Predicted to act upstream of or within 7-methylguanosine mRNA capping and mRNA transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NCBP3 (nuclear cap binding subunit 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01666458_01679245.mRNA True 2308 mRNA 0.47 11 1666241 1679917

Neighbor

gene id symbol gene type direction distance location
CI01000006_01649163_01661667 NA coding upstream 4481 1649163 ~ 1661760 (+)
CI01000006_01570716_01587422 NA coding upstream 78460 1570716 ~ 1587781 (+)
CI01000006_01554462_01567732 TPST1L, TPST1 coding upstream 98469 1554462 ~ 1567772 (+)
CI01000006_01551365_01552945 NA coding upstream 112583 1551365 ~ 1553658 (+)
CI01000006_01545476_01546708 CRCP coding upstream 119523 1545476 ~ 1546718 (+)
CI01000006_01680551_01688030 PGAP2 coding downstream 634 1680551 ~ 1688655 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding downstream 33042 1712959 ~ 1739325 (+)
CI01000006_01778632_01788481 RIR1, RRM1 coding downstream 98715 1778632 ~ 1788481 (+)
CI01000006_01814388_01822488 TNFSF10L3 coding downstream 134471 1814388 ~ 1822871 (+)
CI01000006_01842317_01859671 NA coding downstream 162400 1842317 ~ 1861834 (+)
G41165 NA non-coding upstream 166077 1499912 ~ 1500164 (+)
G41128 NA non-coding upstream 167208 1420533 ~ 1499033 (+)
G41134 NA non-coding upstream 206579 1451243 ~ 1459662 (+)
G41087 NA non-coding upstream 280728 1298166 ~ 1385513 (+)
G41081 NA non-coding upstream 374736 1290577 ~ 1291505 (+)
G41225 NA non-coding downstream 158225 1838142 ~ 1839882 (+)
G41262 NA non-coding downstream 236717 1916634 ~ 1916911 (+)
G41263 NA non-coding downstream 238488 1918405 ~ 1918737 (+)
G41242 NA non-coding downstream 239015 1918932 ~ 1923944 (+)
G40768 NA other upstream 1173215 488407 ~ 493026 (+)
G40767 NA other upstream 1182906 360009 ~ 484185 (+)
G40772 NA other upstream 1187047 475465 ~ 479194 (+)
G41170 NA other downstream 12148 1692065 ~ 1695821 (+)
G41424 NA other downstream 965745 2645662 ~ 2660570 (+)
G41591 NA other downstream 1156250 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 2049313 3734554 ~ 3736035 (+)
G41996 NA other downstream 3437289 5117206 ~ 5124149 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019716 ncbp3 coding NC_007132.7 CM002905.2 30996076 ~ 31013817 (-)
bowfin (Amia calva) G154142 NA unknown CM030142.1 CM030142.1 9090422 ~ 9092573 (-)