CI01000006_01554462_01567732 (TPST1L, TPST1)


Basic Information

Item Value
gene id CI01000006_01554462_01567732
gene name TPST1L, TPST1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1554462 ~ 1567772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01554462_01567732.mRNA
ATGAGAAAACAAACATGCAACATTCTCCTGATCTGTGTGGTCATCAGCTCCATCACGGTGTTTTATCTTGGCCTCAGCACAATAGATTGTCCCAATGCCCGTTCTCGATCGGCACATCATGGGTGGGCAGTAAATCTACACGGTGGCAGAAACCTAAGTGACCCGTTACAACTCCCTGAGGAGTACAATGAGGAAACCCCTCTTATTTTTATTGGTGGAGTCCCTCGTAGCGGGACCACACTAATGCGGGCTATGTTGGACGCCCACCCTCACGTTCGGTGCGGAGAGGAGACCCGTGTCATCCCCCGGCTGTTAGCCATGCAAGCCTCCTGGAGTCACTCCGCACGTGAGCGGCTCCGTCTCGATGAGGCTGGCGTCACCGGTGAGGTCCTGGACTCTGCTGTACGTGCCTTCCTGTTGGAGATCATAGTGGGGCACGGCGAGCCCGCTCCGAGGCTCTGCAATAAGGACCCGTTCGCTCTGAAGTCCCTCTCCTACCTCTCCAAGCTCTTCCCAAAAGCGAAGTTTATTCTTATGCTTCGCGATGGCAGGGCAACCGTACACTCTATGATTTCCCGCAAGGTGACTATCACTGGGTTTGACTTGACGAGCTATCGGGACTGTTTGGTGAAGTGGAACCGGGCGGTGGAGGTGATGTATGACCAGTGCCTGGCTGCAGCGGATGGCAACTGTCTGCCCGTGCACTACGAGCAGCTGGTGCTGCACCCCGAGCAGGTCATGCGCATGCTGCTTCAGTTCCTGGATCTGCCGTGGGACACCGCCGTGCTGCACCACGAACAGCTTATTGGGAAAGCTGGAGGAGTTTCATTGTCAAAGGTGGAACTGTCAACTGATCAAGTAGTCAAGCCAGTGAATACGGAGGCTCTGTCTAAATGGGTGGGCAAGATCCCTGCTGATGTGGTGAATGATATGGCCAACCTTGCTCCGATGTTAAGTCGCTTAGGTTATGACCCTCTGGCCAACCCGCCAAATTACAACAAGCCTGATTTCTTATTTCTGAACAACACAAAAATAGTGAAGTTAATCCAAAATTAAAAGGCCATCTGTGGATACAACCTGGGAATACTTGGAAGCA

Function

symbol description
tpst1 Predicted to enable protein-tyrosine sulfotransferase activity. Predicted to be involved in peptidyl-tyrosine sulfation. Predicted to be integral component of Golgi membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alar plate midbrain region; immature eye; integument; nervous system; and periderm. Orthologous to human TPST1 (tyrosylprotein sulfotransferase 1).
tpst1l Enables protein-tyrosine sulfotransferase activity. Predicted to be involved in peptidyl-tyrosine sulfation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human TPST1 (tyrosylprotein sulfotransferase 1).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K01021 TPST; protein-tyrosine sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01554462_01567732.mRNA True 1096 mRNA 0.53 2 1554462 1567772

Neighbor

gene id symbol gene type direction distance location
CI01000006_01551365_01552945 NA coding upstream 804 1551365 ~ 1553658 (+)
CI01000006_01545476_01546708 CRCP coding upstream 7744 1545476 ~ 1546718 (+)
CI01000006_01525438_01530330 NA coding upstream 24087 1525438 ~ 1530375 (+)
CI01000006_01158519_01160763 NA coding upstream 393456 1157729 ~ 1161006 (+)
CI01000006_01149220_01154850 MAT2B coding upstream 399148 1149041 ~ 1155314 (+)
CI01000006_01570716_01587422 NA coding downstream 2944 1570716 ~ 1587781 (+)
CI01000006_01649163_01661667 NA coding downstream 81391 1649163 ~ 1661760 (+)
CI01000006_01666458_01679245 NCBP3 coding downstream 98469 1666241 ~ 1679917 (+)
CI01000006_01680551_01688030 PGAP2 coding downstream 112779 1680551 ~ 1688655 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding downstream 145187 1712959 ~ 1739325 (+)
G41165 NA non-coding upstream 54298 1499912 ~ 1500164 (+)
G41128 NA non-coding upstream 55429 1420533 ~ 1499033 (+)
G41134 NA non-coding upstream 94800 1451243 ~ 1459662 (+)
G41087 NA non-coding upstream 168949 1298166 ~ 1385513 (+)
G41081 NA non-coding upstream 262957 1290577 ~ 1291505 (+)
G41225 NA non-coding downstream 270370 1838142 ~ 1839882 (+)
CI01000006_01842317_01859671 NA non-coding downstream 292532 1842317 ~ 1861834 (+)
G41262 NA non-coding downstream 348862 1916634 ~ 1916911 (+)
G41263 NA non-coding downstream 350633 1918405 ~ 1918737 (+)
G41242 NA non-coding downstream 351160 1918932 ~ 1923944 (+)
G40768 NA other upstream 1061436 488407 ~ 493026 (+)
G40767 NA other upstream 1071127 360009 ~ 484185 (+)
G40772 NA other upstream 1075268 475465 ~ 479194 (+)
G41170 NA other downstream 124293 1692065 ~ 1695821 (+)
G41424 NA other downstream 1077890 2645662 ~ 2660570 (+)
G41591 NA other downstream 1268395 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 2161458 3734554 ~ 3736035 (+)
G41996 NA other downstream 3549434 5117206 ~ 5124149 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location