Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000006_01680551_01688030 |
| gene name | PGAP2 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 1680551 ~ 1688655 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| pgap2 | Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PGAP2 (post-GPI attachment to proteins 2). |
| id | name | namespace |
|---|---|---|
| GO:0008565 | obsolete protein transporter activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000006_01680551_01688030.mRNA | True | 1384 | mRNA | 0.44 | 6 | 1680551 | 1688655 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_01666458_01679245 | NCBP3 | coding | upstream | 634 | 1666241 ~ 1679917 (+) |
| CI01000006_01649163_01661667 | NA | coding | upstream | 18791 | 1649163 ~ 1661760 (+) |
| CI01000006_01570716_01587422 | NA | coding | upstream | 92770 | 1570716 ~ 1587781 (+) |
| CI01000006_01554462_01567732 | TPST1L, TPST1 | coding | upstream | 112779 | 1554462 ~ 1567772 (+) |
| CI01000006_01551365_01552945 | NA | coding | upstream | 126893 | 1551365 ~ 1553658 (+) |
| CI01000006_01712959_01738587 | STIM1B, STIM1 | coding | downstream | 24304 | 1712959 ~ 1739325 (+) |
| CI01000006_01778632_01788481 | RIR1, RRM1 | coding | downstream | 89977 | 1778632 ~ 1788481 (+) |
| CI01000006_01814388_01822488 | TNFSF10L3 | coding | downstream | 125733 | 1814388 ~ 1822871 (+) |
| CI01000006_01842317_01859671 | NA | coding | downstream | 153662 | 1842317 ~ 1861834 (+) |
| CI01000006_01890066_01892979 | RAB39BB, RAB39B, RAB39A, RAB39BA | coding | downstream | 201058 | 1889713 ~ 1893123 (+) |
| G41165 | NA | non-coding | upstream | 180387 | 1499912 ~ 1500164 (+) |
| G41128 | NA | non-coding | upstream | 181518 | 1420533 ~ 1499033 (+) |
| G41134 | NA | non-coding | upstream | 220889 | 1451243 ~ 1459662 (+) |
| G41087 | NA | non-coding | upstream | 295038 | 1298166 ~ 1385513 (+) |
| G41081 | NA | non-coding | upstream | 389046 | 1290577 ~ 1291505 (+) |
| G41225 | NA | non-coding | downstream | 149487 | 1838142 ~ 1839882 (+) |
| G41262 | NA | non-coding | downstream | 227979 | 1916634 ~ 1916911 (+) |
| G41263 | NA | non-coding | downstream | 229750 | 1918405 ~ 1918737 (+) |
| G41242 | NA | non-coding | downstream | 230277 | 1918932 ~ 1923944 (+) |
| G40768 | NA | other | upstream | 1187525 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 1197216 | 360009 ~ 484185 (+) |
| G40772 | NA | other | upstream | 1201357 | 475465 ~ 479194 (+) |
| G41170 | NA | other | downstream | 3410 | 1692065 ~ 1695821 (+) |
| G41424 | NA | other | downstream | 957007 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 1147512 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 2040575 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 3428551 | 5117206 ~ 5124149 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
