Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000006_01814388_01822488 |
| gene name | TNFSF10L3 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 1814388 ~ 1822871 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| tnfsf10l3 | Predicted to enable metal ion binding activity and tumor necrosis factor receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in anterior lateral line neuromast; posterior lateral line neuromast; and posterior lateral line primordium. |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000006_01814388_01822488.mRNA | True | 1379 | mRNA | 0.49 | 5 | 1814388 | 1822871 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_01778632_01788481 | RIR1, RRM1 | coding | upstream | 25907 | 1778632 ~ 1788481 (+) |
| CI01000006_01712959_01738587 | STIM1B, STIM1 | coding | upstream | 75063 | 1712959 ~ 1739325 (+) |
| CI01000006_01680551_01688030 | PGAP2 | coding | upstream | 125733 | 1680551 ~ 1688655 (+) |
| CI01000006_01666458_01679245 | NCBP3 | coding | upstream | 134471 | 1666241 ~ 1679917 (+) |
| CI01000006_01649163_01661667 | NA | coding | upstream | 152628 | 1649163 ~ 1661760 (+) |
| CI01000006_01842317_01859671 | NA | coding | downstream | 19446 | 1842317 ~ 1861834 (+) |
| CI01000006_01890066_01892979 | RAB39BB, RAB39B, RAB39A, RAB39BA | coding | downstream | 66842 | 1889713 ~ 1893123 (+) |
| CI01000006_01943602_01960621 | AFAP1L1B | coding | downstream | 120731 | 1943602 ~ 1960621 (+) |
| CI01000006_01964013_01964347 | GRPEL2 | coding | downstream | 141142 | 1964013 ~ 1964457 (+) |
| CI01000006_01965496_01966308 | NHP2, NOLA2 | coding | downstream | 142625 | 1965496 ~ 1966354 (+) |
| G41165 | NA | non-coding | upstream | 314224 | 1499912 ~ 1500164 (+) |
| G41128 | NA | non-coding | upstream | 315355 | 1420533 ~ 1499033 (+) |
| G41134 | NA | non-coding | upstream | 354726 | 1451243 ~ 1459662 (+) |
| G41087 | NA | non-coding | upstream | 428875 | 1298166 ~ 1385513 (+) |
| G41081 | NA | non-coding | upstream | 522883 | 1290577 ~ 1291505 (+) |
| G41225 | NA | non-coding | downstream | 15271 | 1838142 ~ 1839882 (+) |
| G41262 | NA | non-coding | downstream | 93763 | 1916634 ~ 1916911 (+) |
| G41263 | NA | non-coding | downstream | 95534 | 1918405 ~ 1918737 (+) |
| G41242 | NA | non-coding | downstream | 96061 | 1918932 ~ 1923944 (+) |
| G41170 | NA | other | upstream | 118567 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 1321362 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 1331053 | 360009 ~ 484185 (+) |
| G40772 | NA | other | upstream | 1335194 | 475465 ~ 479194 (+) |
| G41424 | NA | other | downstream | 822791 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 1013296 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 1906359 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 3294335 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 3947218 | 5770089 ~ 5771775 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_019710 | tnfsf10l3 | coding | NC_007132.7 | CM002905.2 | 30701902 ~ 30714665 (-) |
