CI01000006_01890066_01892979 (RAB39BB, RAB39B, RAB39A, RAB39BA)


Basic Information

Item Value
gene id CI01000006_01890066_01892979
gene name RAB39BB, RAB39B, RAB39A, RAB39BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1889713 ~ 1893123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01890066_01892979.mRNA
GTATAAATGTATTTGATACTTTGGACTTCCATACAAATTAATGGTCTCGCATCATATATGTAATAAGGTAATTATATATAACACCTATTTGAATGATACTCGTCCATTTAAAGAAGGAGGCTCAGCTGTTAGTCTATTATGATCTGTTCCTAAAAAATGACTTTCATAATAATAATAATGTCTTTGAGTTGAATAAAACACAAAAATTACAATTCAAGGATAAAAAAATTTTGACAGAATTTTCATTTTTGGGTGAACTATTCCTCTAAGCACATGGTTAGGTTTACTCAGAAAAAAAATACTGTCATTTTGTCTGACAACATACTGTTATTCCTTGACAGATAAAATAAGATATGGAAGCTATATGGCTGTACCAGTTTCGGCTGATTGTCATTGGCGACTCTACGGTGGGAAAGTCTTGTTTGATCAGACGCTTCACAGAAGGACGTTTTGCACAGGTGTCTGATCCTACTGTTGGCGTAGACTTCTTCTCCCGTCTGGTGGAGATTGAACCAGGCAAACGCATCAAGCTTCAGATCTGGGACACGGCAGGCCAAGAGAGATTCAGATCTATCACAAGGGCTTATTATCGTAATTCAGTGGGTGGCCTTTTGCTTTTCGACATCACCAACCGGCGCTCCTTCCAAAATGTCCACGAGTGGCTGGAGGAAGCGCGCAGTCACGTGCAGCCTCACAGCATCGTCTTCTTACTGGTCGGCCACAAGTGTGACCTGGAGCAGCAGCGGCAGGTGAGCCAGCAGGAGGCAGAGAAACTGGCAGCCGCTTACGGCATGCGCTACGTGGAGACCTCGGCCCGTGATGCCATAAACGTAGAGAGGGCTTTCACGGAGCTGACGCGCGACATCTTCGAGCTGGTCAAATGTGGTGACATCACCATCCAGGAGGGCTGGGAGGGTGTCAAGAGCGGTTTCGTGCCCAACGTGGTGCATTCATCCGAGGAGGTGACCAAGAGTGACCGCCGCTGCCTCTGTTGATCAAGTGACTCCTGTCGGCGTATCATGCTCCTTCACTGCAAAACCAGTACCGTCGTTCTCCCTTAGCTTGACATTCCCACTACTGCAACCCCACAGATACTCTCATCCTCTCAATCAATGTTTTCTGCTTCATAGTTACTTCCA

Function

symbol description
rab39ba Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72. Orthologous to human RAB39B (RAB39B, member RAS oncogene family).
rab39bb Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72. Orthologous to human RAB39B (RAB39B, member RAS oncogene family).
rab39b Enables myosin V binding activity. Involved in regulation of autophagy. Located in Golgi apparatus; neuron projection; and vesicle. Implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72.
rab39a Predicted to enable GTPase activity. Involved in phagosome acidification and phagosome-lysosome fusion. Located in phagocytic vesicle.

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01890066_01892979.mRNA True 1139 mRNA 0.46 2 1889713 1893123

Neighbor

gene id symbol gene type direction distance location
CI01000006_01842317_01859671 NA coding upstream 27879 1842317 ~ 1861834 (+)
CI01000006_01814388_01822488 TNFSF10L3 coding upstream 66842 1814388 ~ 1822871 (+)
CI01000006_01778632_01788481 RIR1, RRM1 coding upstream 101232 1778632 ~ 1788481 (+)
CI01000006_01712959_01738587 STIM1B, STIM1 coding upstream 150388 1712959 ~ 1739325 (+)
CI01000006_01680551_01688030 PGAP2 coding upstream 201058 1680551 ~ 1688655 (+)
CI01000006_01943602_01960621 AFAP1L1B coding downstream 50479 1943602 ~ 1960621 (+)
CI01000006_01964013_01964347 GRPEL2 coding downstream 70890 1964013 ~ 1964457 (+)
CI01000006_01965496_01966308 NHP2, NOLA2 coding downstream 72373 1965496 ~ 1966354 (+)
CI01000006_02023656_02025259 SLBP2 coding downstream 130533 2023656 ~ 2025744 (+)
CI01000006_02034527_02040359 FAM53C coding downstream 141404 2034527 ~ 2041268 (+)
G41225 NA non-coding upstream 49831 1838142 ~ 1839882 (+)
G41165 NA non-coding upstream 389549 1499912 ~ 1500164 (+)
G41128 NA non-coding upstream 390680 1420533 ~ 1499033 (+)
G41134 NA non-coding upstream 430051 1451243 ~ 1459662 (+)
G41262 NA non-coding downstream 23511 1916634 ~ 1916911 (+)
G41263 NA non-coding downstream 25282 1918405 ~ 1918737 (+)
G41242 NA non-coding downstream 25809 1918932 ~ 1923944 (+)
G41276 NA non-coding downstream 120143 2013266 ~ 2015646 (+)
G41246 NA non-coding downstream 123007 2016130 ~ 2022876 (+)
G41170 NA other upstream 193892 1692065 ~ 1695821 (+)
G40768 NA other upstream 1396687 488407 ~ 493026 (+)
G40767 NA other upstream 1406378 360009 ~ 484185 (+)
G40772 NA other upstream 1410519 475465 ~ 479194 (+)
G41424 NA other downstream 752539 2645662 ~ 2660570 (+)
G41591 NA other downstream 943044 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1836107 3734554 ~ 3736035 (+)
G41996 NA other downstream 3224083 5117206 ~ 5124149 (+)
G43896 NA other downstream 3876966 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019706 rab39ba coding NC_007132.7 CM002905.2 30540465 ~ 30545121 (-)