CI01000006_04050327_04089669 (GRIA1B)


Basic Information

Item Value
gene id CI01000006_04050327_04089669
gene name GRIA1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4048960 ~ 4091323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04050327_04089669.mRNA
TTATATAAAGCCAACTTTTAGAAACACTTCAAGTCCCTAATAGATATTTTCAACATCTAATACAGCGCAAAAAGGCATTTCAGACAAGGTGTTGTGTTTTCTTTACTACCATCTGTAACCACTGCTACAATAACCTGGTCTCACACTAAAATGTTTACTGCATCATTTGTCAGGTGCTCAGAGATGACATCTCAAAGCCGTTGCAGATGGGACGAGCATCATCTGTGGAGCTTGCAGCAGTTTAGTGATCACAACCCCCCAGATCTGCCCTTGCCAACTCACACAGATGTTTACCAAGCTGAAGCATGATGAGCCCGGCGCATGTGCGCTATCTCCTCAAAGACCCAGATAATAGAGTTAGGGCCTGTAAACACACAGCCGGCTTTGTTGAAGGAGGCAAGGAAAACACTGCTTTGGACTCAAAAGGAGATGGAGAGAAATTCAATTTGTTCCTGTGCATTCCGTCCTTCATATTGACCAGTAAGCTTATCGTAACCGAGCACAAGCCAATGCTGATCGCTGTATTAAAGCATCATAATTTGTTTTTTAAAAACTGCACAGGCTTTGATCCTGTTCCTCTAGAGAAGACCTGGCAGGTGACATCCATAAACTTTGACACCCTGACGGAGGCGGCATTCTTGAAAACCATCCAAGATCTGGAAAATAAGAAGGAGTACAAGATCATTCTGGACTACACACCAAGGCAATTACTCTCCTCACTACTCACCATCCACACTGACAAGATCTCAAAGAAACCACTGCCAAACCAAGTGATCAGAAATCAGCATCCGATACAATTAACCCTGACGATCGCAGCGCAAAAAAAGAACTTGAAGAACTACCACTACATACTAGCAAACCTGGGATTTCTGGATCTTAATCTCACAGAATTCAGGAAGGGAGGTGCCAATGTGACAGGCTTCCAGCTCATGAACTACACAAATCCTAATGTCAGCAGGACAATACAGGACTGGCTGGAGTTTGACAGTAAAGACTTGAAAAGTCCCAAAAGGAGGCTCAAGTACACTGGAGCGCTCACGTATGATGGGGTGACTGTCATGGCCACTGCTTTCCAGAACCTGAGAAAGCAGCGCATTGATATCTCTCGCAGAGGGAATGCAGGAGAGTGTCTGGCCAACCCTCCTGCACCCTGGGGCCAGGGCATCGACATTCAGAGAGCCTTACAGCAGGTGCAGTTTGAAGGACTTACAGGACATGTTCAGTTTAATGACAAAGGACATCGAACCAACTTCACTGTCAGCGTGATGGATCTTGGCCCAAATGGACCCAAGAAAGTGGGCTACTGGAACCAACATGAGAAATATGTGAACACAGCTACTTACAGCAACATACTCAATGAGACGTACGGACTGCAAAACAGGACCTACATAGTCACCACCATCCTGGAATCTCCATATGTGATGCTGAAGAAGAACCATGAGCAGTTTGTGGGAAATGACAAATATGAGGGTTATTGCGTGGAGCTGGCTGCAGAGATTGCCAAGCATGTGGGCTATTCCTACAGACTAGAACTCGTGGGGGACGGAAAGTATGGAGCCAGAGACGCAGAGACAATGATGTGGAATGGGATGGTTGGAGAATTAGTGTATGGCAAAGCAGACGTAGCTGTCGCACCCCTTACCATCACTTTGGTCAGAGAGGAGGTCATCGATTTCTCCAAGCCCTTCATGAGCTTAGGTATATCCATCATGATCAAGAAGCCCACCAAGTCCAAGCCAGGTGTCTTCTCCTTCCTGGACCCACTGGCATACGAGATCTGGATGTGTATTGTGTTTGCTTACATTGGCGTGAGTGTGGTGCTATTCTTGGTGAGTCGCTTCAGTCCATACGAGTGGCATGCAGATGATGAAGAGGATGGAACGGAGCAGCAAAACCAGAACCAACCACCGTCACCAGAGGACAACCAGTCGCCAAATCAGCACGGTCAAAATCAAAATCAGCGAGAGGAGAAGCAGGAGAAGCAACCTGAACACTCTAATGAGTTTGGGATCTTTAACAGCCTGTGGTTTTCCCTGGGAGCCTTTATGCAGCAAGGATGTGATATCTCACCAAGATCTCTCTCCGGTCGTATAGTTGGTGGTGTGTGGTGGTTCTTCACTCTGATTATCATCTCCTCCTACACAGCCAACCTGGCTGCCTTCCTAACTGTGGAAAGGATGGTGTCCCCCATCGAGAGTGCCGAGGATCTAGCTAAGCAAACAGAAATTGCCTATGGAACTCTGGATGGAGGATCCACCAAAGAGTTCTTCAGGAGATCAAAGATCGCAGTATTTGAGAAGATGTGGTCCTACATGAAGTCCGCAGAGCCTTCTGTATTTGTGAAGACGACAGACGAAGGTGTCGTGCGGGTGAGGAAGTCCAAAGGGAAGTATGCTTATCTGCTGGAGTCCACTATGAATGAATACATTGAACAGCGCAAACCATGTGACACCATGAAGGTGGGAGGAAACCTGGACTCAAAGGGCTATGGAGTAGCCACACCCAAAGGATCAGCCCTGAGAAACCCAGTAAACCTGGCAGTGTTAAAACTGAACGAGCAGGGCCTGTTGGACAAATTGAAAAACAAATGGTGGTACGACAAGGGAGAGTGTGGCAGCGGAGGAGGTGATTCCAAGGTCAGCCCCAATATGAGCTATCCAGCGGGTAACCACCACCTTCGGGGAATCCCCGTAAACCTAGCGGTGTTGAAACTCAATGAGCAAGCCGTCTTAGACAAACTGAAAAACAAATGGTGGTACGATAAGGGGGAGTGTGGAAGCAAGGACTCCGCCAGAAAGGATAAGACCAGCGCTCTGAGCCTCAGTAATGTGGCTGGAGTTTTCTACATTCTGATTGGTGGGCTTGGGCTTGCCATGCTGGTGGCCCTTGTTGAGTTCTGTTACAAATCCAGAATCGAGTCTCGAAGAATGAAGCAAATAATTGACGCGGCCATGCTCAGCTCCACACTGACCAGGATGGGCAGCGGAGGTGAGAACGGTCGTGTGATGGCCCATGATTTCCCCAAAGCGGCACAGACTCTGCCATGTATGGGCCAGGCGGCAGCCATGGGCCTCAGCACCACTGGGATGTAAACGGCCATCAGCCTCTCTGAGATCAGGGGACATCAGGAGACCAATGGAAAGAGTGGGAGAGGATGTGAGAGACACTGCAGCGTACAGCTCACCTGCCACTGAAGTACTGCCAAATAGATTCATGGACACACTTTGGGCTCCAAATGAAATTAGATAAGGAGGGAGGAAAATTACTTTTCTAATAATAAGATGTGGTTGTTGTTTTTTGGGGGGAATTTCTCCGGTGCAATAAGGAGATTATGCGTGAGGTGTTTTTGTATGAAGCATCATTTTTGAGAGTTTTTGCTCATTTTATTATTTTCTTCTGCCTTATGATTTATCTTTGAAACACATCTCTGACTGTAAGAGGAACATTTTTACCTAAAATATTCTTCAACCGTAGTTACACATCATTATTTATCACATAGTTCTGGTGGAGTGTGTAATTTCTGTGCCACTAGCATCACTAAGAAGAAATGCAAAATAATGACCTCTGTCTGCATTGGTTAGACAAACAGATCTCATTCCATTCAGGTGGGTTAGGATGCACACTGTATAGTGCTTACTAAATAGTTGCATATTAATCTTGGAAAGGAAAAAGTATCTTAAAAGTGTAGTTCATCCAAAAATGAAAATTCTGTCATCATTTACTTTACCCTTGTGTCCTTTACCTGTACCTGACTTTGTATTTCTTCTGTGGAACATAGAAGAAGATATTTTGAAAAAATGTCTCTCCTTTTTCCCCATTTTCCCAATGTTTTGGTCTCCATTATGGACTAAATTTGAAACATTCTTCAAAATGTTCCACAAAAGAAAGAAAGCCATACAGGTTTGGAACAACATGAGGTTGAGTGTTGACACAATTTTCATTTTTGAATGAACTATCACTTTAACATTGAAAAAAGTATACACTTTACCTTCAAGTCAAAAATTATGAATGAAATGAGGTCGTCCCATGAAAAACTAGGAAGTGTGCTACATCAGTGTGTCAGCTTCATTGCACAGTCTACAAATGTCTTCCTTTCCAACCGGTTTGATTGGCAAGCCTCTCTAGGGAAGGTGAGTTCTTCCGTATGTGCGGAGAGGCTGATTACCAGTTCTGTCATTGTTACTGCTCTATCTCACAGTCTCACCCTTCACTTATGAACGCTTTGGATCAATCACCGCTTCCCTATCCATGCTGCTCGATAGAGTCTGGGAGTTAAAGACGTCAGAGAGAGAAAAGGGATTGTAGACTACGCGTGCAGCTCCGCTTTTTGTGTTATTGTTCTGCCGCTCCCCTTCTGTCTTCCTTTCCTGGTTTACGTGACAATTTTTCTGTTGAAGTAGCTGATGTTATGTATACTACATCATTCTCACACTGAACGGCTTATGAGGTCAGTGACAGAATTAACAGATTCAAGGGCAGCATGAGCACCCAGCAGACCGTCTACTTAGAAACCCTAAAACTTCTGTTTGTAATAATATTGTCATTGTAGTAACAGTTGAAATATTGTCAACAACGATTCCATGAACAGCATTTCATGGAAATCTGCCTAATAGCTGACACAGGGACAACAACATGAATTGCTCGTGCTGTGAGATTAATAGCCTGACTCTAACAGTCCATTTGAGAGGAACAAAGCACGCTGGCAACAGCTTGTTTGCTTGTTGCTATTGTCGTTTTTTTGCTCCA

Function

symbol description
gria1b Predicted to enable AMPA glutamate receptor activity and neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human GRIA1 (glutamate ionotropic receptor AMPA type subunit 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05197 GRIA1; glutamate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04050327_04089669.mRNA False 4746 mRNA 0.45 17 4050019 4091323

Neighbor

gene id symbol gene type direction distance location
CI01000006_04034081_04045505 NA coding upstream 2225 4034081 ~ 4047794 (+)
CI01000006_03941900_03945253 EIF4EBP3 coding upstream 104318 3941299 ~ 3945701 (+)
CI01000006_03893432_03940454 ANKHD1 coding upstream 109058 3893432 ~ 3940961 (+)
CI01000006_03888048_03891012 NA coding upstream 158541 3887373 ~ 3891478 (+)
CI01000006_03883341_03885377 NA coding upstream 163993 3882789 ~ 3886026 (+)
CI01000006_04100433_04105606 NIPAL4 coding downstream 8739 4100062 ~ 4105617 (+)
CI01000006_04107814_04117460 TLCD1 coding downstream 16491 4107814 ~ 4117662 (+)
CI01000006_04124413_04127728 RAB34 coding downstream 33090 4124413 ~ 4127771 (+)
CI01000006_04145907_04147044 SDF2 coding downstream 54091 4145414 ~ 4149174 (+)
CI01000006_04240020_04242545 WBSCR27 coding downstream 148697 4240020 ~ 4242978 (+)
G41795 NA non-coding upstream 20447 4029077 ~ 4029572 (+)
G41792 NA non-coding upstream 36988 4012777 ~ 4013031 (+)
G41791 NA non-coding upstream 40027 4009704 ~ 4009992 (+)
G41751 NA non-coding upstream 99328 3949279 ~ 3950691 (+)
G41747 NA non-coding upstream 178790 3870159 ~ 3871229 (+)
G41774 NA non-coding downstream 2993 4094316 ~ 4095218 (+)
G41763 NA non-coding downstream 29955 4121278 ~ 4123226 (+)
G41767 NA non-coding downstream 50764 4142087 ~ 4144624 (+)
G41804 NA non-coding downstream 68758 4160081 ~ 4160365 (+)
G41806 NA non-coding downstream 81026 4172349 ~ 4172621 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 314041 3734554 ~ 3736035 (+)
G41591 NA other upstream 1210598 2836167 ~ 2839421 (+)
G41424 NA other upstream 1389449 2645662 ~ 2660570 (+)
G41170 NA other upstream 2354198 1692065 ~ 1695821 (+)
G40768 NA other upstream 3556993 488407 ~ 493026 (+)
G41996 NA other downstream 1025883 5117206 ~ 5124149 (+)
G43896 NA other downstream 1678766 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2017161 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2030712 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 3075466 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location