CI01000006_04240020_04242545 (WBSCR27)


Basic Information

Item Value
gene id CI01000006_04240020_04242545
gene name WBSCR27
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4240020 ~ 4242978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04240020_04242545.mRNA
AGTACCAGAATCTGTGTGATTTTTCCTAAAGGAATGGCAAACAACAGTCGGACTTTTTCTGATGTGAGGAATGTGATCCTGTCAGCCCACAAAAACACAGGGGCCCAGGATAAGGTTGGCTTCTATGAAACCTGGGCTGAGGACTATGAGCAGGATGTAGCGCTGCTGGATTACCGTGCCCCTTTGTTAGCGGCTGAGTGTGTGAGCTCATTTTTCACAGGTGACAGAGAGAAGGCCACTGTCCTGGATGTGGCCTGCGGAACAGGCCTGGTCTCTGCACATTTAAAGCAAATGGGGTTTCGTCACTTTGTTGGAGTAGATGGAAGTTTGAGGATGCTGGAGTTGGCAAAGAAAACTGGACTTTATCAGCAACTTATGCAGTGCCTGCTTGGTCAAGATGAAATTTCAGCTGAAACATATGATGTTGTTATAATCGTTGGAGCTCTGAGCGTTGGGCAGGTGCCTTTGACAGTCGTCAGAGAGCTCTGTGATCTTACAAAACCAGGCGGCTATGTGTGCATGACTACAAGAGGGAACGCTGATAACCGGGAGTACAAGGCTGAGCTGGAGCAAATGATCAAAGCGCTTGAGGAAGAGCAGAAATGGAGCCGTGTGACTGTTGTTGAGGTGGAGGAATGGGAGAGAGCTGTTTCAGAAAAGGAAAGCGGGTACATTCCAGGCACCATTTATCTGTATCAGAAAAGTGTTTAGGATTTTAGGATCACACAAGGGCAACCTAAATCTGCTCCGTAATCCACACAGCTGTTCTACTGAATTCTTATTCCACCAGCAGGTGGTGGTATTTTTTCATAAATCATAGTATCACTTGTTTTAAAAGTACTTGCGTTCCCAAGAGAAGTACCTGACCTGACAAGGAATATGTCAAAACATGATCCATCTATTTGTTTTGGCACTAAGTTATTTCACCTGGAACTTGTACACAGTGCAGTCACTTGAAAAACTTTAAGGTTTTTGTTCAAGTAAAGTCCATGAACCTAAAGGATTTCGTGAGAAAATGTCTAAGGCATATGGTTACAAATCTACCATTCCCCAGTTACATCTAACCTTTCAGTTTGCCACTCCCCGATACTCCGACCGCTAAACTTTTTGAAGCTGCCATTTCCGTTGGTGTCATGTGACATAA

Function

NR:

description
Zgc:136279 protein, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04240020_04242545.mRNA True 1144 mRNA 0.45 5 4240020 4242978

Neighbor

gene id symbol gene type direction distance location
CI01000006_04145907_04147044 SDF2 coding upstream 90846 4145414 ~ 4149174 (+)
CI01000006_04124413_04127728 RAB34 coding upstream 112249 4124413 ~ 4127771 (+)
CI01000006_04107814_04117460 TLCD1 coding upstream 122358 4107814 ~ 4117662 (+)
CI01000006_04100433_04105606 NIPAL4 coding upstream 134403 4100062 ~ 4105617 (+)
CI01000006_04050327_04089669 GRIA1B coding upstream 148697 4048960 ~ 4091323 (+)
CI01000006_04257954_04258376 NA coding downstream 13845 4256823 ~ 4258506 (+)
CI01000006_04268235_04268891 CLDNC coding downstream 22658 4265636 ~ 4269257 (+)
CI01000006_04272263_04272907 CLDNH coding downstream 29143 4272121 ~ 4273578 (+)
CI01000006_04284763_04290722 ABHD11 coding downstream 41358 4284336 ~ 4291717 (+)
CI01000006_04305974_04313072 PHKG1A, PHKG1, PHKG1B coding downstream 62952 4305930 ~ 4313251 (+)
G41823 NA non-coding upstream 10789 4228837 ~ 4229231 (+)
G41822 NA non-coding upstream 11228 4228434 ~ 4228792 (+)
G41777 NA non-coding upstream 50202 4189194 ~ 4189818 (+)
G41810 NA non-coding upstream 51475 4188320 ~ 4188545 (+)
G41808 NA non-coding upstream 56705 4183075 ~ 4183315 (+)
G41860 NA non-coding downstream 82594 4325572 ~ 4325809 (+)
CI01000006_04349756_04355615 FIBPB, FIBP non-coding downstream 109503 4349453 ~ 4357955 (+)
G41892 NA non-coding downstream 150736 4393714 ~ 4394213 (+)
G41904 NA non-coding downstream 212519 4455497 ~ 4456349 (+)
G41889 NA non-coding downstream 380043 4623021 ~ 4623252 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 504042 3734554 ~ 3736035 (+)
G41591 NA other upstream 1400599 2836167 ~ 2839421 (+)
G41424 NA other upstream 1579450 2645662 ~ 2660570 (+)
G41170 NA other upstream 2544199 1692065 ~ 1695821 (+)
G40768 NA other upstream 3746994 488407 ~ 493026 (+)
G41996 NA other downstream 874228 5117206 ~ 5124149 (+)
G43896 NA other downstream 1527111 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1865506 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1879057 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2923811 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location