G41823


Basic Information

Item Value
gene id G41823
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4228837 ~ 4229231 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47471
ATTGTCCTTTATCACAAAACACTACGTGCCTGAGGAAATAAACAATGTTAAACAATACAATACAAATGTAATAAAAAAACAAAATCCATAGGTTGAAATGTACTAGTTACAGTATAGTCTAACTGGTACAACAAGTAGGAGTATGTTTGTGAAATTTACTTGATTGTGACCTTACCTTAACTTTATTATGTGTCATACATTTTCATTTAGGTTGTTTGGTCTTTAGAACATGTGTGAGAATGAAAAATTAAACGCGATGTTCACATCCACCCTACTGTTTAACAACTAACCTTGGTCTTGCTGATGTAGCTACACGACGTTCTACCCCAGAAGAAATTAGAAAAGTTTGGTGTGAATCCATCAATGTTTGGATTATGGGTCCAATATGCTTCCAC

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47471 True 395 lncRNA 0.40 1 4228837 4229231

Neighbor

gene id symbol gene type direction distance location
CI01000006_04145907_04147044 SDF2 coding upstream 79663 4145414 ~ 4149174 (+)
CI01000006_04124413_04127728 RAB34 coding upstream 101066 4124413 ~ 4127771 (+)
CI01000006_04107814_04117460 TLCD1 coding upstream 111175 4107814 ~ 4117662 (+)
CI01000006_04100433_04105606 NIPAL4 coding upstream 123220 4100062 ~ 4105617 (+)
CI01000006_04050327_04089669 GRIA1B coding upstream 137514 4048960 ~ 4091323 (+)
CI01000006_04240020_04242545 WBSCR27 coding downstream 10789 4240020 ~ 4242978 (+)
CI01000006_04257954_04258376 NA coding downstream 27592 4256823 ~ 4258506 (+)
CI01000006_04268235_04268891 CLDNC coding downstream 36405 4265636 ~ 4269257 (+)
CI01000006_04272263_04272907 CLDNH coding downstream 42890 4272121 ~ 4273578 (+)
CI01000006_04284763_04290722 ABHD11 coding downstream 55105 4284336 ~ 4291717 (+)
G41822 NA non-coding upstream 45 4228434 ~ 4228792 (+)
G41777 NA non-coding upstream 39019 4189194 ~ 4189818 (+)
G41810 NA non-coding upstream 40292 4188320 ~ 4188545 (+)
G41808 NA non-coding upstream 45522 4183075 ~ 4183315 (+)
G41807 NA non-coding upstream 49585 4179000 ~ 4179252 (+)
G41835 NA non-coding downstream 12291 4241522 ~ 4256763 (+)
G41860 NA non-coding downstream 96341 4325572 ~ 4325809 (+)
CI01000006_04349756_04355615 FIBPB, FIBP non-coding downstream 123250 4349453 ~ 4357955 (+)
G41892 NA non-coding downstream 164483 4393714 ~ 4394213 (+)
G41904 NA non-coding downstream 226266 4455497 ~ 4456349 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 492859 3734554 ~ 3736035 (+)
G41591 NA other upstream 1389416 2836167 ~ 2839421 (+)
G41424 NA other upstream 1568267 2645662 ~ 2660570 (+)
G41170 NA other upstream 2533016 1692065 ~ 1695821 (+)
G40768 NA other upstream 3735811 488407 ~ 493026 (+)
G41996 NA other downstream 887975 5117206 ~ 5124149 (+)
G43896 NA other downstream 1540858 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1879253 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1892804 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2937558 7166778 ~ 7168925 (+)

Expression


Co-expression Network