CI01000006_04272263_04272907 (CLDNH)


Basic Information

Item Value
gene id CI01000006_04272263_04272907
gene name CLDNH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4272121 ~ 4273578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04272263_04272907.mRNA
CTATATATTGACATCTCAGCACTTGGTAAATAATCTTCCACCATTTTTTAATCTTCAATTTGATAGTACTGCTTTTATTTATGAAATTCACCATAGCCAATTTCTAATTTTCCTAGGGGAAAAAGTACATCTAACAGGCACCATGTCGATGGGAATGGAGATTGGGGGCATTGCCCTGGGCATTATCGGCTGGATCATTAGCATTGTCGCTTGCGCCCTACCTATGTGGCGCGTCTCGGCCTTCGTTGGCGCAAACATCGTCACGGCACAAAACATCTGGGAAGGTTTGTGGATGAATTGTGTTGTACAGAGCACCGGACAGATGCAATGCAAGATTTACGACTCCATGCTAGCACTGTCACAGGACATGCAGGCTTCCAGAGCCATGTCGGTCATCGCCATCATCTTGGCCATTCTGGGCGTGATGATCTCCATCATGGGCGCCAAATGCACCAATTGTATCGAGGATGAAGCAGCCAAGGCTAAAGTCATGATCGTCTCCGGCATCATGTTCATTCTTTCCGGCATCCTGGAGCTCATTCCGGCAGCCTGGGTTGCAAACCAAATCATTCGGGACTTCTACAACCCGTTACTGCCTGCCGCTCAGCAAAGAGAGATCGGGGCATCAATCTACATTGGGTTTGCTGCTGCTGTTCTGTTAATGATTGGAGGAGCATTGCTGTGCTGCACCTGTCCTCCAAAAGAGAAGAAGTACAATCCACCGAGAATGGGCTACTCCGCCCCACGCTCTACCAGTGCTGGATATGACAAGAAGGACTATGTTTAAATATTTGTTGGGGGAAAAAAAATGAAGAAAAGAAGGATTTGAAGATCTCACACAAAGGGTGGAGATACTTCTGAAAGGACTCCGCAATGAAGGGTCATACGATGCTGTCAATATTTGCTTTTCGTCTGACTGGTGTGTGTGTCTGTGTGTGTGTGTGTGTTAAGGGCTGGTTTCATAGGTTTACTAGTCAGGGATTTTTGTGTTCATACATTTCCTGTTTGATACTATTTTATATGCTGTTGTTTAAATGTGGCCATTTTTGTTTGAAATGACACAAAACTGGTGTCAAAATGTATTCTTTGCTCTGTGTAAGCAGACTTAAATAAGTAGAGATGTGCAAATTTTGTCTATCACTAATGTATGTTGACAGGAAGAGGAAGACTTTAGCTCTTTACATGTATTTGCTTAGGAAAATTCCACTGGACACAGAAATGGAATATATATTTTGTTTTGTTTTTACTTTTAGGTTTCAGTTGTGTCTATTCTTGAGGACATCAAGTTTTTTTTCTGTATAGTTCCCCATGTTTTGTACAGTTGTTTTATTATTCATACATATTTTACAGAGTTTAAAGATTGAACACATTTTCTAGATTTTCATAACCATTTAAGACTGTGACTAATATTTTTCAATTGTATTGCTTTTATATTATCAAAATTGATTGTGTGGTAAA

Function

NR:

description
Claudin h

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04272263_04272907.mRNA True 1458 mRNA 0.41 1 4272121 4273578

Neighbor

gene id symbol gene type direction distance location
CI01000006_04268235_04268891 CLDNC coding upstream 2864 4265636 ~ 4269257 (+)
CI01000006_04257954_04258376 NA coding upstream 13615 4256823 ~ 4258506 (+)
CI01000006_04240020_04242545 WBSCR27 coding upstream 29143 4240020 ~ 4242978 (+)
CI01000006_04145907_04147044 SDF2 coding upstream 122947 4145414 ~ 4149174 (+)
CI01000006_04124413_04127728 RAB34 coding upstream 144350 4124413 ~ 4127771 (+)
CI01000006_04284763_04290722 ABHD11 coding downstream 10758 4284336 ~ 4291717 (+)
CI01000006_04305974_04313072 PHKG1A, PHKG1, PHKG1B coding downstream 32352 4305930 ~ 4313251 (+)
CI01000006_04317651_04320972 TMEM179B coding downstream 43301 4316879 ~ 4321250 (+)
CI01000006_04342598_04343449 TMEM223 coding downstream 68575 4342153 ~ 4343507 (+)
CI01000006_04345659_04346853 FOSL1B coding downstream 71214 4344792 ~ 4347026 (+)
G41835 NA non-coding upstream 15358 4241522 ~ 4256763 (+)
G41823 NA non-coding upstream 42890 4228837 ~ 4229231 (+)
G41822 NA non-coding upstream 43329 4228434 ~ 4228792 (+)
G41777 NA non-coding upstream 82303 4189194 ~ 4189818 (+)
G41810 NA non-coding upstream 83576 4188320 ~ 4188545 (+)
G41860 NA non-coding downstream 51994 4325572 ~ 4325809 (+)
CI01000006_04349756_04355615 FIBPB, FIBP non-coding downstream 78903 4349453 ~ 4357955 (+)
G41892 NA non-coding downstream 120136 4393714 ~ 4394213 (+)
G41904 NA non-coding downstream 181919 4455497 ~ 4456349 (+)
G41889 NA non-coding downstream 349443 4623021 ~ 4623252 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 536143 3734554 ~ 3736035 (+)
G41591 NA other upstream 1432700 2836167 ~ 2839421 (+)
G41424 NA other upstream 1611551 2645662 ~ 2660570 (+)
G41170 NA other upstream 2576300 1692065 ~ 1695821 (+)
G40768 NA other upstream 3779095 488407 ~ 493026 (+)
G41996 NA other downstream 843628 5117206 ~ 5124149 (+)
G43896 NA other downstream 1496511 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1834906 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1848457 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2893211 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location