CI01000006_04317651_04320972 (TMEM179B)


Basic Information

Item Value
gene id CI01000006_04317651_04320972
gene name TMEM179B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4316879 ~ 4321250 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04317651_04320972.mRNA
ATATATAAAGACACGTGACGGACAGATTTAGTCCAGGGTCTGATTTATCACTATAAACACAACAGGCACATTAGACTTCTTCTAAAAATATGAAAAATATGATAAACAACGACACTGCAGGGTTCAGTCATTCAGTGTCACTCTACGCGTCGCTGTTACTGAAGCTCGTTGAAAAGTATTTATCGCCACCTATTGGTTTGGAGAAAGACGCATTAAGTCCGAATGTCCCACTCCATTGTTTCCACTGATTTCAGTTTTTGTCACAGACCACTTATTGCTGTGTAACCTTCTTTTCCCTCGAATAATCAACAAATCCTCCGTTACTATCATTACTGTATAATGATGTTCACAGACATGGATGTAAATTCTCATTCATGCTCAAAATATAATATGGTGGTACATCTCATTTCTCCTCTCCTATAGGACAATTTAAGTAAAATGTGTCAGCTTAAACTACCAGTTTGTCATCCTAAGCATATATTGATATATCATAATCTTAAAATTAGGTGTTTTTTGGGTAAATGTTGATTCATCATATGCTTCAGGCTGGCTGAATGTTTTGTCTAAACTTGACTTGAATGCAGTCTTGTATTATACCAAATAGCAATGCTGTGAATTTCTCTGACTAGACTCATTGTGAAAAGCAACATTGTTGTGAGCACAGGACATACTTTAGTGACGATCCACATTGCCACAGCAGTTTGAAGAGCGCATGAATGAGGCATTTGGCTGCTGGACACCGTGAGACAGTGACTGTGAGAGCATGTTCATGATGGGACTACCCTGGCTGCTAGTTTTGGAGCTTGTCCTTTACGCTGGTTGTTTCATTTGTGGGGTGATAGCTGCCGCCTGGATGACACTAACTCAGGGCCACTTTGATGGACGGTGCATCCTCTATGGAAGTGTTCATTATAACACATCTGGCCAGGCTTTGACTGTGGAAGGCTCCAGTTCTCCTTCTGTCTGCTATTTTGTATCAGCCATCGCAGTGTGCATGGCTATTTACTGCTTTTCCCTTATTCTTTACTGGATCTATGCCAGCTGTGTAGATGAGGATGTGAGAAGGGGGACTGTTTCTCTCAACACATCTCTGGGAGTCTGTGGCCTACTTCTGTTTTTTCTCTTGGTATCAGGATGTATTCTCAAGATCGGTCGGGACAGCCTGTGTTTCTCTGTCCTTCATAATGTTCCTTCCATTAACAGTTGTGAAGATGCAGAGAATAAGACATGGGCTCATCCATACACTGGAAATCAGTTCTACACAGGACTGTACAGTACTGAGAGGTCAATGTGGGTAAGCTTCTTCTTCTGGGTGTTAATAACGGCCGTGGTGGTCATACAGAGACGCCAGAGCTCAAGGTTGAAGGTTTGGGGTAATGATGAGTGGAGCCGTGCTGAGACCGAGCCCTTCCTTCATCGTCCATCCCACCCAAGATAAATCACCAGAAACCACCATCACATGAGCTTATCACGAAGTATCATGCAGAGTTTAGTGCATTCAGTTATGTGGGAACACAAGCAGTGATGAAATACTTAATATTTTTGTGGCAACACTTGAATTTTTATTTAATTATTCATCTAAATAGTGCTTTGATGTGATAGCTACAATAATATATACAAAGTTTAAAGATATGTCCAGAGAGCCAATTGACATGCCTAAGAACATGTCATTGGACATGATGGATATAAGACGAGTCAACCAACCATTGTTGCAAA

Function

symbol description
tmem179b Located in nuclear speck and nucleolus.

NR:

description
Zgc:110591 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04317651_04320972.mRNA True 1716 mRNA 0.41 5 4316879 4321250

Neighbor

gene id symbol gene type direction distance location
CI01000006_04305974_04313072 PHKG1A, PHKG1, PHKG1B coding upstream 3628 4305930 ~ 4313251 (+)
CI01000006_04284763_04290722 ABHD11 coding upstream 25162 4284336 ~ 4291717 (+)
CI01000006_04272263_04272907 CLDNH coding upstream 43301 4272121 ~ 4273578 (+)
CI01000006_04268235_04268891 CLDNC coding upstream 47622 4265636 ~ 4269257 (+)
CI01000006_04257954_04258376 NA coding upstream 58373 4256823 ~ 4258506 (+)
CI01000006_04342598_04343449 TMEM223 coding downstream 20903 4342153 ~ 4343507 (+)
CI01000006_04345659_04346853 FOSL1B coding downstream 23542 4344792 ~ 4347026 (+)
CI01000006_04349756_04355615 FIBPB, FIBP coding downstream 28203 4349453 ~ 4357955 (+)
CI01000006_04358978_04367223 EFEMP2B coding downstream 37728 4358978 ~ 4368148 (+)
CI01000006_04374883_04381019 NPAS4 coding downstream 53364 4374614 ~ 4381077 (+)
G41835 NA non-coding upstream 60116 4241522 ~ 4256763 (+)
G41823 NA non-coding upstream 87648 4228837 ~ 4229231 (+)
G41822 NA non-coding upstream 88087 4228434 ~ 4228792 (+)
G41777 NA non-coding upstream 127061 4189194 ~ 4189818 (+)
G41810 NA non-coding upstream 128334 4188320 ~ 4188545 (+)
G41860 NA non-coding downstream 4322 4325572 ~ 4325809 (+)
G41892 NA non-coding downstream 72464 4393714 ~ 4394213 (+)
G41904 NA non-coding downstream 134247 4455497 ~ 4456349 (+)
G41889 NA non-coding downstream 301771 4623021 ~ 4623252 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 580901 3734554 ~ 3736035 (+)
G41591 NA other upstream 1477458 2836167 ~ 2839421 (+)
G41424 NA other upstream 1656309 2645662 ~ 2660570 (+)
G41170 NA other upstream 2621058 1692065 ~ 1695821 (+)
G40768 NA other upstream 3823853 488407 ~ 493026 (+)
G41996 NA other downstream 795956 5117206 ~ 5124149 (+)
G43896 NA other downstream 1448839 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1787234 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1800785 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2845539 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019620 tmem179b coding NC_007132.7 CM002905.2 25664393 ~ 25669820 (-)