CI01000006_04358978_04367223 (EFEMP2B)


Basic Information

Item Value
gene id CI01000006_04358978_04367223
gene name EFEMP2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4358978 ~ 4368148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04358978_04367223.mRNA
CTGTGTGTGTGGCAGTGAGAGTGTCCTGTACCCTGTAACTATGAAAACCACATATGTGCTACTTTGTGTGGGTCTGTTTGTTCTTCCTGCTACAATCTGTCAGTCTCCTGCTGAACGTGACTCTTACACAGAGTGTACAGATGGCTATGAGTGGGACGTGCAGACTCAACTCTGTCGAGACATAAACGAGTGTGATACTATTCAGGGGGCATGTCAGGGAGAGATGAAATGCTTTAATCACTATGGTGGTTACCTGTGCCTTCCTCGCTCCGCCTATGTGGTCACCGCACCTGAGCCCTCCAGCCAATCAGAGCCCAGTGTGCCTGTGGGGACAAGCGAGGCCTTTAACCCCTGTCCCGTAGGCTACAGGGCCCAAGGAGATACCTGTGCAGACATTGATGAGTGTGAATTGGACATGCATGACTGTCAGCCCAGCCAGCAGTGCATCAACACCGTGGGTACCTACACCTGTCAGTGCCCTGACGGCTACAGCAAGATTGGTATAGAGTGTGTTGATATTGACGAATGCAGGTACAGGTACTGTCAGCATCGCTGCGTGAACGTGCCGGGATCTTTCTCTTGTGAATGTGAGCCTGGATTCCAGCTGGCAGGAAACAACCGATCCTGTGTTGATGTAAATGAGTGTGAGATGGGAGCACCTTGTCAGCAAAGGTGTTACAACAGTTATGGCACATTCCTGTGTCGCTGTGATCAGGGCTATGACCTGGGACCTGATGGATACTCATGCAATGATATTGATGAGTGCAGCTATTCCAGTTTCCTTTGCCAGTTTCAGTGTGTGAATGAGCCTGGAGCTTTTTCCTGTGTTTGTCCGGATGGTTACGAGCTACTTGGATCACGACTCTGTCAGGATGTGAATGAGTGTGAGACAGGCACTCATCTGTGTGGGGAGAGACAGGTCTGTGTGAACATCCATGGTGGGCATCAGTGCGTGGACTACAACCGCTGCCAGGACCCCTACACCCAGGTCTCAGAGAATCGTTGTATATGTCCAGTGGTGAAGTCAGAGTGTCGTGACATGCCTTTCTCCATTGTGCATCGATATATGAGCATCACCTCTGAACGCTCAGTTCCCTCAGACATCTTCCAGATCCAGGCTACCAGCGTCTATCCTGGAGCCAACAACTCCTTCCGCATTCGTTCTGGAGACGAAAATGGAGAATTCTACATACGGCAAATCAACAACATCAGTGCCATGTTGGTTTTGGCCCGAGCAGTTACTGGACCGAAGGAGTACGTCCTCGATTTGGAGATGGTGTCTGTCAATCCTCTCATGAACTACCAGACCAGCTCTGTTCTTCGTCTCTCCGTTTATGTTGGACCTCATGCTTTCTGAGGAGAGAGAAATGGAGGGATAAACATAGGAAAAACACTGAACGACAGAAGAATTTTTAATTCAGTTTATTTCTACTTTCATGTGTTAAAAATTGGGAACACAATTCCAGAACTCACCAGTCTTTTTTTGTGGCTGACTTTGGCCTGTGACTGCGGGCCTATTCTGGGAAGTGCTAAAGTATCTGAACATTCATTCCTCTCACTTTGTCACCGTGGACTCATTCTCACACATACATGCAGCATACAAGCACACACACATATCAGCTCCAGATATTTCAAAAAGATACATTGAGATATAATTTCTTACTAGTACTAGTTTTGCTAACAAAGTCCCACAATAGATATTTACAGTATAATTATATCTATCCTACATATAACACACATTACAAAGAACCTTTGTAATTACACTGATCGAGTGTAATACTGTATAAAAAACACAAACTAAAGGCAATCAGGTCTCTCTGGGCCTTGAATGAAACATGAGGAGAACACATTTCTATGTAAATAATTTGTGAAACCTTTCTTAAGTATATTGTTGCAGTTTTTCTAATGCTTATTGAATTCACTTCTCCTGCTTGTGTTTCCTCAATTAGACTCCTTGATACAAAAATCATTTTTCTTTGCAATATTACATTGTTAAAGTAAAAAGTAAACACATTAAATATCTTTGTTTTTTGTGATCTTTTTCTTTCTTGTCTGTAGACTGAAAATATCCCATTTTGTGTACATACTAATAATTCGGTTAAGTTTCTCTTGATTGTGAGTGCTGAAGGTAAGTAAATGAAATGTATTACTCAGGTGTCTCCACATGGTGACAGTGTAACACTGGTGAACACATGGTGAATTTGACCTTTTTGCTATTAGCTGAAAGAACCATTATTACAGTCACGTTTTAAGGGTCAAAGTTCACAAACCTGTAGCCTAAA

Function

symbol description
efemp2b Predicted to enable calcium ion binding activity. Predicted to act upstream of or within elastic fiber assembly. Predicted to be located in extracellular space. Is expressed in several structures, including hindbrain neural plate; mesoderm; musculature system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in aortic aneurysm; arterial tortuosity syndrome; autosomal recessive cutis laxa type IB; endometrial cancer; and osteosarcoma. Orthologous to human EFEMP2 (EGF containing fibulin extracellular matrix protein 2).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04358978_04367223.mRNA True 2282 mRNA 0.44 10 4358978 4368148

Neighbor

gene id symbol gene type direction distance location
CI01000006_04349756_04355615 FIBPB, FIBP coding upstream 2688 4349453 ~ 4357955 (+)
CI01000006_04345659_04346853 FOSL1B coding upstream 11952 4344792 ~ 4347026 (+)
CI01000006_04342598_04343449 TMEM223 coding upstream 15471 4342153 ~ 4343507 (+)
CI01000006_04317651_04320972 TMEM179B coding upstream 37728 4316879 ~ 4321250 (+)
CI01000006_04305974_04313072 PHKG1A, PHKG1, PHKG1B coding upstream 45727 4305930 ~ 4313251 (+)
CI01000006_04374883_04381019 NPAS4 coding downstream 6466 4374614 ~ 4381077 (+)
CI01000006_04383784_04384119 MRPS12 coding downstream 15308 4383456 ~ 4384168 (+)
CI01000006_04386002_04393078 NA coding downstream 17854 4386002 ~ 4393103 (+)
CI01000006_04418319_04451714 CNKSR2B coding downstream 50171 4418319 ~ 4451773 (+)
CI01000006_04455069_04463903 SMS coding downstream 86921 4455069 ~ 4463925 (+)
G41860 NA non-coding upstream 33169 4325572 ~ 4325809 (+)
G41835 NA non-coding upstream 102215 4241522 ~ 4256763 (+)
G41823 NA non-coding upstream 129747 4228837 ~ 4229231 (+)
G41822 NA non-coding upstream 130186 4228434 ~ 4228792 (+)
G41892 NA non-coding downstream 25566 4393714 ~ 4394213 (+)
G41904 NA non-coding downstream 87349 4455497 ~ 4456349 (+)
G41889 NA non-coding downstream 254873 4623021 ~ 4623252 (+)
G41937 NA non-coding downstream 257373 4625521 ~ 4625779 (+)
G41939 NA non-coding downstream 259109 4627257 ~ 4627472 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 623000 3734554 ~ 3736035 (+)
G41591 NA other upstream 1519557 2836167 ~ 2839421 (+)
G41424 NA other upstream 1698408 2645662 ~ 2660570 (+)
G41170 NA other upstream 2663157 1692065 ~ 1695821 (+)
G40768 NA other upstream 3865952 488407 ~ 493026 (+)
G41996 NA other downstream 749058 5117206 ~ 5124149 (+)
G43896 NA other downstream 1401941 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1740336 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1753887 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2798641 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location