CI01000006_11476139_11503761 (PNPLA7)


Basic Information

Item Value
gene id CI01000006_11476139_11503761
gene name PNPLA7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11476139 ~ 11504598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_11476139_11503761.mRNA
GCTATTGGGAGCGAAATTCGTTCCCGCCTGCAGCAGTTTGTGGAGGAGAGGATGCAGACCACCATGCTGACGGGTGTTTTGATCGGTGCCGTGGTGGCTGTGTGTCTGATAGGAATCACTGTGCTTCTCCTCTACCGCAGATATAAACTGGCGAGTCAACAGGCTGGTGTTCCACGCTATCGCTTCAGAAAAAGAGATAAAGTGCTCTTTTATGGCAGGAAAATCATGAGAAAGGTCCAGACCTTGTCCTCGACACCAACCTCCACTTCGGTGTCTAAGCAGCGCTCCCGGAAGAGGCCTAAAGTTCTAAGTATAGCGCGCAGGATCCTGCGGATCAGGAAGGAGCCACCCACTTTGCAGCCCAAAGAACCCCCTCCCTCTCTCTTGGAAGCAGATCTCACTGAATTTGATGTGCAGAACTCAAACCTGCCCTCAGAGGTGCTCTACATGCTCAAGAACGTGAGGGTGCTTGGTCATTTTGAGAAGCCCTTGTTTTTGGAGCTGTGTCGGCACATGGTGTTTGTGGAGCTGCAGGAGGGAGAGGGGCTGTTCAAGCCAGGGGATGATGATGACAGCATTTATGTGGTTCAGGATGGAAGGCTTGAGCTTTGCATTCATGAGTTTGATGGCACAGAGCCTGTGGTGAAGGACGTGTTGCCCGGGGACAGCGTTCACAGTCTTCTCAGCATTCTAGACATCATTACAGGTTATCCTGCTCCTTATAAGACCGTGTCTGCTCGTGCAGCGGTCAGGTCTACCATATTGCGTTTGCCTGCCTCAGCTTTCCAGTCAGTGTTTGAGAAATACCCAGAGACACTAGTGAGAGTCATACAGATAATCATGGTGCGCCTGCAGAGAGTCACTTTCCTGGCACTTCACAACTACCTAGGACTGACGACCGAGCTTTTCAATCAGGAGAGACAAGCAGTGCCGCTGTTCACGGTCAACAGTGTGCTCACTGAGGGGAGTCCTGGCAGAATCCCACGCAGACCCCACTTCCAGACACAACCAGAAGACGAGCACCTGTTGAGCTCCGGAGAGCAATTGACTGACTCAGATGGAGGGCAAGCTGGTTCATATGAAAACACGTCAATAGTTGCACGGAGGTCTCGCTCGGTCTCGATGCCTGTAGAGAGTTCAGGAGTGGCAGGAAATGACCTAAACATGGCCTATGAACGGGCCCGAGTCACCATAGACGATCCTCCATCCACTTCTGTTATTCACAAGTCCATTTTGAAGAAGAGTGTGACCATGCAGCATGCCCCGTCCGCTGTGATTCACTACACAGATAATGCACCACACTCTGACGTGCCTCCTAGTAAAGTGGGCGCTATATTCCAGGCAGCCAAGAAGGACCTGCTGGGGATTATTCCGCTGCAGGACCCCAGCTTGCTGGAGGGCAGGGTGACGCTCCATCAAGTTAAAGCTGGATCTATTGTAGCTCGCCAAGGAGATCAGGAAGTAAGTGTGCAGTTTCTGATTTCGGGCACATTGCATGTGTACCAGCGGATGATTGACCGAGAAGAGGACACGTGTCTGTTTGTGGCTCACCCAGGAGAGCTGGTGGGTCAGCTGGCTGTACTGACGGGGGAGCCACTTATCTTCACCGTACGGGCACATCGTGACTGCAGCTTCCTGTCTATTTCTAAAACACATTTCTATGAGATCATGCGAGCTGAGCCCACGGTGGTGCTGAATGTGGCTCATACAGTTGTAAGAAGGATGTCATCTTTCGTCAGACAGATTGACTTTGCCCTTGACTGGATGGCTGTGGAGGCGGGCAGAGCTGTCTACAGGCAGGGCGATAAGTCTGACAGTACTTTTATAGTGCTCAGTGGCCGCCTGCGTTCCGTCATCATGAAGGAGGATGGGAAAAAGGAGCTGACTGGAGAGTATGGCCGAGGAGATCTCATTGGAGTGGTGGAAGCTCTGACCCATCAGAACAGAGCAACTACTGTTCATGCTGTTCGGGACTCAGAACTGGCTAAACTACCCGAGGGTGCTCTTAGTTCCATCAAGAGAAAATTCCCACAGGCATCTCGCAGTCTAGCTCTACACACACCTGGCAGTAAATGGGACGCAGGAAACCCTGCTTCAAACCTTTCCACCGTCACTGTGCTCCCGGTATCAGAGGAGGTTCCTCTGACCGCGTTCACCCTGGAACTTCAGCATGCACTCTTAGCTATCGGTCCCACTCTTCTCTTGACTAGTGACATCATCAAACAGCGCCTCGGCTCTGCTGCATTAGACAGTGTGCATGAGTACAGGTTGTCAAGTTGGCTGGGTCAGCAGGAAGACATCCACCGCATAGTCCTGTATCAGACAGATGTGTCACTCACCCCATGGACTCAGCGCTGCATCAGACAGGCTGATTGCATCATCATCGTGGGACTGGGAGAGCAGGACCCAGCCGTGGGAGAGCTGGAACGCATGTTAGAGGGGAGTGCGGTAAGAGCACAGAAACAGCTGGTATTGTTGCACCGTGAGGATGGCCCTCCTCCCAAAGGAACAGCTGAATGGCTGAACATGCGGAGCTGGATCTCCAGGCACCTTCACCTGTCCTGCCCTCGCAGAGTCTTCTCCAAGAGGAGCCTGCCAAAATTGAGAGAGATGTACCAGCGTGTGTTCCAGAAACCCGCCGATCGCCATTCAGATTTCTCACGCCTGGCCCGTGTCCTGACAGGCAACACCATCGCTCTGGTGCTGGGGGGCGGAGGAGCCAGGGGTTGTTCTCAGGTGGGCATCATTCGAGCATTGAATGAAGCGGGAATCCCTATTGATCTGGTGGGCGGCACCTCTATTGGTTCCATGATGGGCGCACTGTATGCAGAGGACCGCAGTTACAGCAGGATGAAGATCAGAGCCAGAGAGTGGGCCATGGAAATGACATCAGTGTTTAAGAAAGTGCTAGACCTGACCTACCCTGTCACTTCTATGTTTTCCGGAGCTTCGTTTAACTCTAGCATTAATGGTGTCTTCAAGGACAAACAGATAGAGGATCTCTGGATCCCATATTTCAACATCACCACAGACATCACCGCCTCCACTATGAGAGTGCACACTGACGGCTCCCTGTGGAGGTATGTGCGTTCCAGCATGTCTCTTTCTGGTTATCTGCCACCACTGTGTGATCCAAAAGATGGACACCTGCTCATGGACGGAGGCTACATCAACAACCTGCCAGCGGATGTGGCACGCTCCATGGGTGCCAAGGTGGTTATTGCCATTGATGTGGGAAGCCAAGATGAAACCAACCTCACTAACTACGGGGACGCCCTTTCTGGCTGGTGGCTGCTATGGAAACGGCTCAACCCACTGGCTGAGAAAGTCAAGGTGTTGAACATGACTGAGATCCAGGCCCGGCTGGCTTATGTGTGCTCAGTGAGACAGCTTGAATCTGTTAAAAACAGCGACTACTGTGAATATATCAGACCTCCCATCGACAGATACCGCACGCTCGAGTTTGGCAAGTTTGATGAGATCAGCGAAGTGGGGTACCAGCATGGGAAGACAGTGTTTGATGTGTGGTGCAGGAGTGGCGTGGTAGAAAAGATGATGAAGGACAGACATCAGGAAGAATTCCACAAAACGCAGAGCAGTGTGGTGACCTGTCCCAATGCTTCCTTCACTGATCTGGCTGAGATCGTCTCACGGATTGAGCCAGTCAAACCAGCTCATGTGGATGATGAATCTGACTATCACACGGACTATGAAGAGGAGATGGCAGAGAGCGCTCTGTCAGACATGGAGCTTTACAACCAATATAGTGAGCACACAGAGGAGGAATTGACCGCAGACACTAATTGGAGAGGACTCGCAGACAGCGTGTACGTTCTGACGTGGAAAACCTGGGGCCTGTGTCCTCCAAAACGCCGCAAACTTCCAGCCCTAACAGCCCTCCCACCCTCCACACCAGAAAAGCACACGGACAGGAATCCCTCCATCCTGAGCACTGACCCAGATGTCAGCATGGCAGTGTACAAACACTGACACTCCTATGATTTGGGGTTTGGCCCTGTCTACACATTCCAGTAACACTCCAACCAAGTACATCCAGACCTTGAGGAGCAAAAAAATGAGTCCTCTTGTGCAAAAAAATCCTAAGAAAACATCTTTTTCTGTACTATTGCACTGGGTAACACGGCATGGGGTTGAAATGATACGAGTCCTTGCATCTCAGCGGTAACTCTAGACTATCTCAGAGTTTCTGTGAAGTTTCATGCTGACTATGAACTCTTTTGATTGCGAAGTCTGAACTTTAGTCCATCTTGAATGACCAGTTAGTCAATAACAGAAGAAATTCCATGAGTAAGACAATCAGCTACAACATTGCTTTTACAAACAGTTAGATTAGATTGCGTGTACGGATTCTTTCTACTGTCAATGAAGGTAGCAGAAAACAGTGAAATGATGATTTAGAGAGAAAAAAGAAAAATATAGACTGTAGAGTTCACTATTTATAAGCTCAGATGACTGATGTTGACTTTTTCTTTCATTTAAACCTCTCAAAGACCATTTGACAAGTCGATTTGTCCCACAGCTTGGCTGTTTCACGCAGGTCAGCGACTCCTTGCTGAGGGGTACCTGATCTGTGAACAGTTGAGTGATCGATTTAAACTAACCAGTGTCGTAGATCATACCGAATATGTCTGATAAGTTAATCATACCTCTAGCTGCATGTGATCAAACACAAGCAAAAATGCAAGCCTATCAATGCAATATTTTTTTTATATTTTTTGTTTTTGTTGTAAAAAAAAAAATACCTGTGTGATACCTGTAGTGCCTTTTAACCTTAATAGCAGCCATACAAGACAATGGTAATGGGTA

Function

symbol description
pnpla7 Predicted to enable lysophospholipase activity. Predicted to be involved in phosphatidylcholine catabolic process. Predicted to be located in endoplasmic reticulum membrane and lipid droplet. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

GO: NA

KEGG:

id description
K14676 NTE, NRE; lysophospholipid hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_11476139_11503761.mRNA True 4827 mRNA 0.50 33 11476139 11504598

Neighbor

gene id symbol gene type direction distance location
CI01000006_11469982_11473164 CLIC4, CLIC3 coding upstream 2512 11469129 ~ 11473627 (+)
CI01000006_11452997_11455817 POU5F3 coding upstream 19577 11452241 ~ 11456562 (+)
CI01000006_11436920_11440304 NA coding upstream 35835 11436920 ~ 11440304 (+)
CI01000006_11429439_11432136 NA coding upstream 43893 11428774 ~ 11432797 (+)
CI01000006_11395393_11412606 NA coding upstream 63533 11395123 ~ 11412606 (+)
CI01000006_11546432_11575289 NSMFA coding downstream 41834 11546432 ~ 11575476 (+)
CI01000006_11704767_11714559 WDR34 coding downstream 200169 11704767 ~ 11714661 (+)
CI01000006_11751944_11752854 NA coding downstream 246256 11750854 ~ 11753218 (+)
CI01000006_11784520_11803562 NA coding downstream 277433 11782031 ~ 11803850 (+)
CI01000006_11888383_11923287 NA coding downstream 383594 11888192 ~ 11924390 (+)
G47299 NA non-coding upstream 60435 11415438 ~ 11415704 (+)
G47298 NA non-coding upstream 60960 11414756 ~ 11415179 (+)
G47163 NA non-coding upstream 83189 11387203 ~ 11392950 (+)
G47315 NA non-coding downstream 22190 11526788 ~ 11527016 (+)
G47362 NA non-coding downstream 163776 11668374 ~ 11668589 (+)
G47368 NA non-coding downstream 180037 11684635 ~ 11684975 (+)
G47333 NA non-coding downstream 210088 11714686 ~ 11720080 (+)
G47390 NA non-coding downstream 285613 11790211 ~ 11790433 (+)
G47145 NA other upstream 964333 10485358 ~ 10511806 (+)
G46652 NA other upstream 1316888 10156579 ~ 10159251 (+)
G45416 NA other upstream 2641442 8818814 ~ 8834697 (+)
G45355 NA other upstream 3263751 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 3275994 8197881 ~ 8200145 (+)
G47318 NA other downstream 119669 11624267 ~ 11638252 (+)
G48094 NA other downstream 773022 12277620 ~ 12279541 (+)
G48081 NA other downstream 872408 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020228 NA coding CM030127.1 CM030127.1 13597969 ~ 13613378 (+)