CI01000006_11546432_11575289 (NSMFA)


Basic Information

Item Value
gene id CI01000006_11546432_11575289
gene name NSMFA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11546432 ~ 11575476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_11546432_11575289.mRNA
CCTTCACACTGCAGAAGCCGAGCCACATTCTCAAGTTTGAGGAGTCCAGCTTTCAAACCTCCCGACGCAGACAGCTGCCGCATGCGGAGCATTACTCATATCCCTATGAAAGCCCTTTATACCCAAGGCTGGTGTCAGCTTAGCAGAGCAGCTCGTGCATTTGGAGAGTACCTTCACACCCATCCTGAGAACCACGGATCAGATCACTTACTGTCTGACACCCTCGTTGGCCACGACTCTGATTCCCCAGACAGCCTGTGTGCTCAAAACAACAACTTTCACAGCTGCATCGCCGTCAGCGCCGACCCCAGCTTGATTAACCCTGCCGTGGGCCTCCTGGAACCACCACCTCCGACGACTTCCTCCAAGAGCCGGCTGTCCCTAGAGCGCAGCTTCTCAGCAGAGGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCTCGGGTCTATACCATCACTGGAGAGAGCGGCATGCTGGGAACCAGCCGGGGAAGCAAGGAGAACCTGGAGCTTGAGGTCTTGAAAGGGGGACGGGAGGCGTGTCATGCCCAGCCCTCTACGTCCTCCAACTCATCTTCTCCGACTCAGCACCACCACCACCATGGAAGCGGAAGCGGGAGTGTGAGCGGGAGCGGCAACCACCATCACGGCAACCACCATCATGGTAACCACCATCATGGCAACATCAGTGGAGGCGGAAATGGCGGAACCAACCCCCACCAGCACATCTCTAGTGCTGGAACGTCGCACCATCAGCACGGGGCACACCACCACCACCTTTCCCAGCCTCTGCAGAGCTCAGTCAGCGCACACAACATTCGTGGCTGGGGGGAGGGAAAGGAATGTGGCCTGGCGTGTGAGTCCTGTTCTGGGGCTCCATCACGCAGCCAAGGCTCCCTGGACCTGGAAAGCAGCACCCGAGAGGCAGGCAAGCAGCGCCGGCCACCACTAGAGCGGATGTGCAGTGTGGACCGCATGACTGGGCTGGAGCGAGACGATAACAGTTGGTTCCCTAAAGAGAACATGTTCAGCTTTCAGACTGCTACCACGACCATGCAGGCGGTTTTCCGGAGTCTAGCAGAGAGAAAGAGGAGAAAGAGTGAGGTGGAGTCAGTCGCCATCATCCAGAGGAATTTCCGGAAGCATTTAAGAATGGTGGGCAGCAGAAGAATGAAAGCACAAATCTGTGAGGATCATGGGGCGTTGCGTGCGTGTGCGTGTGACCATCTCTCCACTTCACTAGCATTTGCAGAGCGCAGGGCGAAGAGTTTCAACCGATCCTGGAGCGATCCGACCCCTGTCAAACAAGACTCCCTAACCGACTCAAAAGACAGTGGGGATCTGCAGACGACCTGCTGTACCCCAGACGAGGGCGGATGTGAAGACATGGACTGGGAGGAGGAGAGAGAGATGGAGAGACTGGCATGTGAAGGGGATGACTTTATCCCTCCTAAAATTATGCTGATTTCATCTAAAGTCCCCAAAGCAGAATATGTTCCCAATATTATTCGAAAGGATGATCCTTCTATTATACCCATACTCTATGAGATTGAGAAGAGATTGACAGCCTACAGGAAGGGCTCCAAGATCTGGCGCATGCTGATCTTCTGTCAGGGCGGCCCAGGACACCTGTACCTGCTGAAGAATAAAGTGGCCACTTTTGCCAAGGTCGAGAAAGAAGAAGACATGAGCCAGTTTTGGAAACGACTTAGCCGGTTTATGAGTAAAGTGAATCCAGAGCCAAACCTGATCCACATCATGGGCTGCTATGTCCTGGGCAATCCGAATGGAGAGAAGCCTGACAAGTGTTATATGACAGGAGCCCCGAGATTACGCCCCAAGGACACATTTATGGCATTCTTGGAACCTAATGTACAAATGCGTTTCTATGGTGATGGATTTCGACGTAAATCTCATTCGCCATGCGTCATTGCCCAAGAGCTGTTCCAGAAACTGAAGAACCTGATGAGGCCTTATTCTGTCACATTTGAGTCACCGCTGGAGCTCTCTGCTCAGGCACTCAAAACTCCTCGACTACGAAGATCTCTTGTGACCCCGCGCGGGTCAGCGTGTAGCATTGCGGGCAGGACGTCCCACTTTAAAACTCCATTCTACCAGCTTTCATTTCGGAGAACAGGAGGAAGAGGAAAACGAGTGGAGACCGACACAGCCACCTCGCTGCGTCACAACTATTGTTTATTTCAGCTCGTCTCTGCGGACTTCAACCTCCTCCGAACGGTAACACACAAGGGACAAAAACAAAAAGCAAATTGTTCAAAATGCAAGAGAAATCCGGATACGTGGATGTTTCGGTTCTCTAATGGAGAAAAGTGAGGGTGTTTCTCTGGTTGACAAACAAGTTGTCGACTGTTTTCTTTTTTTAAACTAACATATCGCCGAGCGCTACCGAACACTAGCCTAGACAGTTGTGCTTATGACAGAGTCCTGCGTGCAATATCATGTCGCGCCGAAACTTACCTACCAGAACACACAGAAATGGTCATATATGAAATAACAACTA

Function

symbol description
nsmfa Predicted to act upstream of or within regulation of neuron migration and regulation of neuronal synaptic plasticity. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia and hypogonadotropic hypogonadism 9 with or without anosmia. Orthologous to human NSMF (NMDA receptor synaptonuclear signaling and neuronal migration factor).

GO:

id name namespace
GO:2001222 regulation of neuron migration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_11546432_11575289.mRNA True 2527 mRNA 0.52 15 11546432 11575476

Neighbor

gene id symbol gene type direction distance location
CI01000006_11476139_11503761 PNPLA7 coding upstream 41834 11476139 ~ 11504598 (+)
CI01000006_11469982_11473164 CLIC4, CLIC3 coding upstream 72805 11469129 ~ 11473627 (+)
CI01000006_11452997_11455817 POU5F3 coding upstream 89870 11452241 ~ 11456562 (+)
CI01000006_11436920_11440304 NA coding upstream 106128 11436920 ~ 11440304 (+)
CI01000006_11429439_11432136 NA coding upstream 114186 11428774 ~ 11432797 (+)
CI01000006_11704767_11714559 WDR34 coding downstream 129291 11704767 ~ 11714661 (+)
CI01000006_11751944_11752854 NA coding downstream 175378 11750854 ~ 11753218 (+)
CI01000006_11784520_11803562 NA coding downstream 206555 11782031 ~ 11803850 (+)
CI01000006_11888383_11923287 NA coding downstream 312716 11888192 ~ 11924390 (+)
CI01000006_12092807_12095434 NA coding downstream 516913 12092389 ~ 12095668 (+)
G47315 NA non-coding upstream 19416 11526788 ~ 11527016 (+)
G47299 NA non-coding upstream 130728 11415438 ~ 11415704 (+)
G47298 NA non-coding upstream 131253 11414756 ~ 11415179 (+)
G47362 NA non-coding downstream 92898 11668374 ~ 11668589 (+)
G47368 NA non-coding downstream 109159 11684635 ~ 11684975 (+)
G47333 NA non-coding downstream 139210 11714686 ~ 11720080 (+)
G47390 NA non-coding downstream 214735 11790211 ~ 11790433 (+)
G47912 NA non-coding downstream 258756 11834232 ~ 11834488 (+)
G47159 NA other upstream 24729 11416229 ~ 11521703 (+)
G47145 NA other upstream 1034626 10485358 ~ 10511806 (+)
G46652 NA other upstream 1387181 10156579 ~ 10159251 (+)
G45416 NA other upstream 2711735 8818814 ~ 8834697 (+)
G45355 NA other upstream 3334044 8209555 ~ 8212388 (+)
G47318 NA other downstream 48791 11624267 ~ 11638252 (+)
G48094 NA other downstream 702144 12277620 ~ 12279541 (+)
G48081 NA other downstream 801530 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019440 nsmfa coding NC_007132.7 CM002905.2 13455308 ~ 13535601 (-)