Gene
RNA
| Item | Value |
|---|---|
| gene id | G47333 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 11714686 ~ 11720080 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU53850 | True | 1302 | lncRNA | 0.48 | 6 | 11714686 | 11720080 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_11704767_11714559 | WDR34 | coding | upstream | 25 | 11704767 ~ 11714661 (+) |
| CI01000006_11546432_11575289 | NSMFA | coding | upstream | 139210 | 11546432 ~ 11575476 (+) |
| CI01000006_11476139_11503761 | PNPLA7 | coding | upstream | 210088 | 11476139 ~ 11504598 (+) |
| CI01000006_11469982_11473164 | CLIC4, CLIC3 | coding | upstream | 241059 | 11469129 ~ 11473627 (+) |
| CI01000006_11452997_11455817 | POU5F3 | coding | upstream | 258124 | 11452241 ~ 11456562 (+) |
| CI01000006_11751944_11752854 | NA | coding | downstream | 30774 | 11750854 ~ 11753218 (+) |
| CI01000006_11784520_11803562 | NA | coding | downstream | 61951 | 11782031 ~ 11803850 (+) |
| CI01000006_11888383_11923287 | NA | coding | downstream | 168112 | 11888192 ~ 11924390 (+) |
| CI01000006_12092807_12095434 | NA | coding | downstream | 372309 | 12092389 ~ 12095668 (+) |
| CI01000006_12176092_12189504 | NA | coding | downstream | 456012 | 12176092 ~ 12189828 (+) |
| G47368 | NA | non-coding | upstream | 29711 | 11684635 ~ 11684975 (+) |
| G47362 | NA | non-coding | upstream | 46097 | 11668374 ~ 11668589 (+) |
| G47315 | NA | non-coding | upstream | 187670 | 11526788 ~ 11527016 (+) |
| CI01000006_11436920_11440304 | NA | non-coding | upstream | 267346 | 11436920 ~ 11440304 (+) |
| CI01000006_11429439_11432136 | NA | non-coding | upstream | 278837 | 11428774 ~ 11432797 (+) |
| G47390 | NA | non-coding | downstream | 70131 | 11790211 ~ 11790433 (+) |
| G47912 | NA | non-coding | downstream | 114152 | 11834232 ~ 11834488 (+) |
| G47916 | NA | non-coding | downstream | 117672 | 11837752 ~ 11838191 (+) |
| G47948 | NA | non-coding | downstream | 156735 | 11876815 ~ 11877051 (+) |
| G48067 | NA | non-coding | downstream | 261776 | 11981856 ~ 11982106 (+) |
| G47318 | NA | other | upstream | 76434 | 11624267 ~ 11638252 (+) |
| G47159 | NA | other | upstream | 192983 | 11416229 ~ 11521703 (+) |
| G47145 | NA | other | upstream | 1202880 | 10485358 ~ 10511806 (+) |
| G46652 | NA | other | upstream | 1555435 | 10156579 ~ 10159251 (+) |
| G45416 | NA | other | upstream | 2879989 | 8818814 ~ 8834697 (+) |
| G48094 | NA | other | downstream | 557540 | 12277620 ~ 12279541 (+) |
| G48081 | NA | other | downstream | 656926 | 12377006 ~ 12384827 (+) |
