G88498 (LOC103038427,LOC108431374,LOC106578530)


Basic Information

Item Value
gene id G88498
gene name LOC103038427,LOC108431374,LOC106578530
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4766319 ~ 4771095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119080
CCCCTTACTTATTACCATCTGCTTGTTAGCACTTCAGGGATAAAGGCATAAACCCACAAGCATTAGCTAAATTGAGTTAAGAGATTGGAGTGCATGTCTGCATGggtgtgttatgtgtgttagTATAGGAGAAGGGATGCTcatgtgtatgggtgtgtgtatgtgtgtgtaaggaggGGGAGGGGCCTGTAAAGCTTTTAAAGTAATTTGTATTGCTCCAAAGAGGTCTGCCCCTACAAGCGATGCTAAAGGTTTTGAGGCCAGTCAAATTCTGAGCACAGTTTGACTGAGCTAAATGATCAATGGGGCTCAACAGTGTGTGTAGGCCACGGCGGAAACAAAGCAGTGAGTGTGTTAAAGCTGCCTGGGAAACAGGCACACTGCCAGCCACTGCTGAAAAAGTTCAGCATTCAAAAGACCCACGAATGGAACACTGTGCACAGTTAAGTACTAGAGAAACACACTGAATATGTGGGGGAAGGAAATAGTAGCTCCAAGAATGTTCACAAGTGTGTGTTAGGGAGTGGAAGCCATACCCATTTTCATCTGGCATATCCTGATCCGCCTCGGCTGTAGAGGACTCCACCTCTCCGTCTGCATCCACACTGCTCTCACTGCCTTGAGCGGACAGACCACAAGGACTCTCCGGAGTCAAAGACTCGCcaTTGGCCCTTTTCTCAAGCAAGTGTATGTAGAGATCTTTCTCCTCCAGAATCTTCTTTAAGGTGctgatctctctctgtttctccagCAGCTCCTTCTGCAGCCGATAGTTACTCTCCTCCAGAGTCTCACAGAACGCCCGACTCTCCTCCAGACTGTCGAAAGGACCTGGTGGGTCATCCAGACAAAGGAACTCTCGTACAGCAACGCAGTTTGCAATGTCTTTGTGGGCCACCAGGTTCTGCAAGAAGGCCTGCAGGCCTAACTGTCTGTCCTCCAGGAAGTTTGAATCATAGTTATCTTTAAACCAGCGCTTAGGAGGCAGAGCAAGCCGGAATCCAGGAAACATTTC

Function

NR:

description
sorting nexin-16-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119080 True 1015 lncRNA 0.48 4 4766319 4771095

Neighbor

gene id symbol gene type direction distance location
LOC103047438 ralyl,LOC108431401 coding downstream 292224 4200272 ~ 4474095 (-)
f13a1 NA coding downstream 719084 4023011 ~ 4047235 (-)
nrn1 nrn1,nrn1a,LOC107713755,LOC107734388 coding downstream 756580 4000370 ~ 4009739 (-)
c10h18orf63 NA coding downstream 1195200 3537062 ~ 3571119 (-)
eci2 eci2,zgc:92030,LOC107713764 coding downstream 1341301 3410826 ~ 3425018 (-)
rmdn1 rmdn1,LOC107729932,LOC107668150,LOC107756855 coding upstream 107922 4879017 ~ 4887302 (-)
cdk13 cdk13,LOC107713640,LOC107566913 coding upstream 1110464 5881559 ~ 5895535 (-)
LOC103042957 ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841 coding upstream 1130143 5901238 ~ 5910180 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding upstream 1231224 6002319 ~ 6206469 (-)
impa2 impa2 coding upstream 1440803 6211898 ~ 6225600 (-)
G88494 NA non-coding downstream 43159 4722772 ~ 4723160 (-)
G88474 NA non-coding downstream 85481 4680037 ~ 4680838 (-)
G88470 NA non-coding downstream 169772 4596168 ~ 4596547 (-)
G88461 NA non-coding downstream 190495 4575587 ~ 4575824 (-)
G88460 NA non-coding downstream 192691 4573306 ~ 4573628 (-)
G88504 NA non-coding upstream 36213 4807308 ~ 4807716 (-)
G88561 NA non-coding upstream 263444 5034539 ~ 5041190 (-)
G88573 NA non-coding upstream 684191 5455286 ~ 5492368 (-)
G88574 NA non-coding upstream 760331 5531426 ~ 5531653 (-)
G88613 NA non-coding upstream 1156594 5927689 ~ 5928220 (-)
G88465 NA other downstream 170994 4595058 ~ 4595325 (-)
G88458 NA other downstream 200115 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 1074771 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 1412444 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 2479080 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 1905180 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 2332476 7103571 ~ 7215239 (-)
G88779 NA other upstream 2346566 7117661 ~ 7118126 (-)
G88789 NA other upstream 2470616 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 5013528 9784623 ~ 9854099 (-)

Expression


Co-expression Network