rmdn1 (rmdn1,LOC107729932,LOC107668150,LOC107756855)


Basic Information

Item Value
gene id rmdn1
gene name rmdn1,LOC107729932,LOC107668150,LOC107756855
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4879017 ~ 4887302 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238647.3
TGGTATACAGCGCTCGGGTTACAGGGCGCTTCGCCCACTCTCAGGTTCACTTCCATTCAGCCCGTCTGATAGTGGAGGTCGCTGAGCTGGGGGTCAGTGGAGCTGCAGAATGGCCTCTGTAGCTGCGGTCCGGGCGGGTTTCAGAGCCGCGGAGAGGGAGCTGAAGAGCCGGGTCAGCGGGCAGCAGCAGCTCGGGCCCTTCCGGAGGATCTCAACTCGTgtgatatattttgtgtgttttggctcAAATCAGGCTAGAAAGACTGCATTCCTGGCTGCTATACCTGCTCTATCTTACCTGGGATATGAGGCTCACAAGAAAGTGTCGTTTGCAACCACAGTCTACGCACTTGACAAAGCTGACGAGGTTATAGAACGAGCAGATTACCTGTACAGCTGTGGAGAGACTGAGAAACTCTaccagctgctgctgcagtatAAGGACAGTGATGATGCTGAGTTCTTGTGGAGGCTGGCACGGGCTTCACGAGACCTTGCCTTAGTACCCAACGTTGCTGCTGACCAGAAGAAACAGCTCACCTATGAAGCCTTTGACTACGCCAAAAAAGCACTGGAGAAGAATGAAGCCTGCTTTGCTGCACACAAGTGGTATGCCATCTGCCTCAGTGATGTGGGTGATTATGAAGGAGTCAAAGTTAAAATTGGAAATTCCTACATAATTAAGGACCATTTGGAGAGAGCCATAGAGCTGAATCCGAAAGATGCTACATCTATCCACATCTTGGGTTACTGgtgtTTCGCCTTTGCTGAGTTGCCGTGGTACCAGCGTAAAGTTGCAGCGGTTATATTTGCATCTCCCCCCACTGCTACATACGAAGAGGCTTTGGCTTATTTTCTGAAAGCTGAAGACGTGGACCCAAATTTCTACAGCAAGAACCTTCTGATGCTGGGAAAGACCTACATGATGCTTAAGGACCAGGACAAAGCTCTTCTTTGGCTCCATAAAGCACGGGACTATCCAGCAATAACAGAGGAGGACAAGCAGgttcatAAAGAAGCACTGGACCTGCTGAAGAAACTCGGTGGCTGATGGAAGTATCAGACAGTCACTGATAGTACCAGATATCACACAGAGCTGGACCCAACACAttgtttctaatgttttagttttccaagctgtatttttaattctaaaagccttaaaataaaaagtttgatTGTATTCTAAGGtaacagtaataaaatgtaaatagtttTAACTGCACCAAGTGTAAAAAGATTTTGCTTGTAATTAACCATGGCCCATTTTCTATATCATCATCGTAGGCTACATTCAAAGTCTcagttaaatcagatttttggctTAGATCAGATTTATCTTGATGGTTCAGATTCATAATAACCTGCATATCTGTAATGTgaccaaatctgtccctgaaagaGTATATGAGCACAGACTGGTACAGTTATGAATGTAACAGCCTCAGTTTGTGCTGTGCTGCCTGTGTTGTTCCAAATTCTACATGCCAGAATCTGACTCCCCATTTGTAACATTCTTTAATGTGTTGTGAAGGATAGCttaatattaagttttttttattaactgaaACAGGAATTGTAAGTGTAATGAGTTCGCATGTATGTATGCGAAGGGGAGTTGTATCCTGTAAGGAGACAGtatttggcacaacactggtGCTTGCTCtttacattcatgtcgcatgccCCAAACATATGATCTATGACCACATACAGCTGACAGATCCgatttaaaaagaataaaagtgaAGAAAGTGGTCACTTGAGCCTAGTAGTATGTTAACATAACCTTATTATAATAATCACACTAGAGAATGAGTTCAGAGTGATGCTGGATTTACCAGGTAATACAGGCCATTTGATTTGTGCTTCCTGATTAACTCTACTATTGTTGAGTGGTGTGGTGAATTAGACCGGAAACAAAATCAAATTCAATGTAAAGATGGtcatatacatttattaaatatggTTCTCTCCACAGGCAAGATCCAACTGATAACCCCCTTCCCTCCCaagaaaacgaaaaaaaaaaaaaaaaaaaa
>XM_015602818.2
CTGGCAGCCCCGGCTCTGACGCTGTGTGGTATACAGCGCTCGGGTTACAGGGCGCTTCGCCCACTCTCAGGTTCACTTCCATTCAGCCCGTCTGATAGTGGAGGTCGCTGAGCTGGGGGTCAGTGGAGCTGCAGAATGGCCTCTGTAGCTGCGGTCCGGGCGGGTTTCAGAGCCGCGGAGAGGGAGCTGAAGAGCCGGGTCAGCGGGCAGCAGCAGCTCGGGCCCTTCCGGAGGATCTCAACTCGTGCTAGAAAGACTGCATTCCTGGCTGCTATACCTGCTCTATCTTACCTGGGATATGAGGCTCACAAGAAAGTGTCGTTTGCAACCACAGTCTACGCACTTGACAAAGCTGACGAGGTTATAGAACGAGCAGATTACCTGTACAGCTGTGGAGAGACTGAGAAACTCTaccagctgctgctgcagtatAAGGACAGTGATGATGCTGAGTTCTTGTGGAGGCTGGCACGGGCTTCACGAGACCTTGCCTTAGTACCCAACGTTGCTGCTGACCAGAAGAAACAGCTCACCTATGAAGCCTTTGACTACGCCAAAAAAGCACTGGAGAAGAATGAAGCCTGCTTTGCTGCACACAAGTGGTATGCCATCTGCCTCAGTGATGTGGGTGATTATGAAGGAGTCAAAGTTAAAATTGGAAATTCCTACATAATTAAGGACCATTTGGAGAGAGCCATAGAGCTGAATCCGAAAGATGCTACATCTATCCACATCTTGGGTTACTGgtgtTTCGCCTTTGCTGAGTTGCCGTGGTACCAGCGTAAAGTTGCAGCGGTTATATTTGCATCTCCCCCCACTGCTACATACGAAGAGGCTTTGGCTTATTTTCTGAAAGCTGAAGACGTGGACCCAAATTTCTACAGCAAGAACCTTCTGATGCTGGGAAAGACCTACATGATGCTTAAGGACCAGGACAAAGCTCTTCTTTGGCTCCATAAAGCACGGGACTATCCAGCAATAACAGAGGAGGACAAGCAGgttcatAAAGAAGCACTGGACCTGCTGAAGAAACTCGGTGGCTGATGGAAGTATCAGACAGTCACTGATAGTACCAGATATCACACAGAGCTGGACCCAACACAttgtttctaatgttttagttttccaagctgtatttttaattctaaaagccttaaaataaaaagtttgatTGTATTCTAAGGtaacagtaataaaatgtaaatagtttTAACTGCACCAAGTGTAAAAAGATTTTGCTTGTAATTAACCATGGCCCATTTTCTATATCATCATCGTAGGCTACATTCAAAGTCTcagttaaatcagatttttggctTAGATCAGATTTATCTTGATGGTTCAGATTCATAATAACCTGCATATCTGTAATGTgaccaaatctgtccctgaaagaGTATATGAGCACAGACTGGTACAGTTATGAATGTAACAGCCTCAGTTTGTGCTGTGCTGCCTGTGTTGTTCCAAATTCTACATGCCAGAATCTGACTCCCCATTTGTAACATTCTTTAATGTGTTGTGAAGGATAGCttaatattaagttttttttattaactgaaACAGGAATTGTAAGTGTAATGAGTTCGCATGTATGTATGCGAAGGGGAGTTGTATCCTGTAAGGAGACAGtatttggcacaacactggtGCTTGCTCtttacattcatgtcgcatgccCCAAACATATGATCTATGACCACATACAGCTGACAGATCCgatttaaaaagaataaaagtgaAGAAAGTGGTCACTTGAGCCTAGTAGTATGTTAACATAACCTTATTATAATAATCACACTAGAGAATGAGTTCAGAGTGATGCTGGATTTACCAGGTAATACAGGCCATTTGATTTGTGCTTCCTGATTAACTCTACTATTGTTGAGTGGTGTGGTGAATTAGACCGGAAACAAAATCAAATTCAATGTAAAGATGGtcatatacatttattaaatatggTTCTCTCCACAGGCAAGATCCAACTGATAACCCCCTTCCCTCCCaagaaaacgaaaaaaaaaaaaaaaaaaaa

Function

symbol description
rmdn1 Predicted to enable microtubule binding activity. Predicted to be active in cytoplasm; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN1 (regulator of microtubule dynamics 1).

NR:

description
regulator of microtubule dynamics protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238647.3 True 2042 mRNA 0.43 10 4879017 4887276
XM_015602818.2 False 2035 mRNA 0.43 10 4879017 4887302

Neighbor

gene id symbol gene type direction distance location
LOC103047438 ralyl,LOC108431401 coding downstream 404922 4200272 ~ 4474095 (-)
f13a1 NA coding downstream 831782 4023011 ~ 4047235 (-)
nrn1 nrn1,nrn1a,LOC107713755,LOC107734388 coding downstream 869278 4000370 ~ 4009739 (-)
c10h18orf63 NA coding downstream 1307898 3537062 ~ 3571119 (-)
eci2 eci2,zgc:92030,LOC107713764 coding downstream 1453999 3410826 ~ 3425018 (-)
cdk13 cdk13,LOC107713640,LOC107566913 coding upstream 994257 5881559 ~ 5895535 (-)
LOC103042957 ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841 coding upstream 1013936 5901238 ~ 5910180 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding upstream 1115017 6002319 ~ 6206469 (-)
impa2 impa2 coding upstream 1324596 6211898 ~ 6225600 (-)
stk17a stk17a coding upstream 1340303 6227605 ~ 6275310 (-)
G88504 NA non-coding downstream 71301 4807308 ~ 4807716 (-)
G88498 LOC103038427,LOC108431374,LOC106578530 non-coding downstream 107922 4766319 ~ 4771095 (-)
G88494 NA non-coding downstream 155857 4722772 ~ 4723160 (-)
G88474 NA non-coding downstream 198179 4680037 ~ 4680838 (-)
G88470 NA non-coding downstream 282470 4596168 ~ 4596547 (-)
G88561 NA non-coding upstream 147237 5034539 ~ 5041190 (-)
G88573 NA non-coding upstream 567984 5455286 ~ 5492368 (-)
G88574 NA non-coding upstream 644124 5531426 ~ 5531653 (-)
G88613 NA non-coding upstream 1040387 5927689 ~ 5928220 (-)
G88614 NA non-coding upstream 1042709 5930011 ~ 5930511 (-)
G88465 NA other downstream 283692 4595058 ~ 4595325 (-)
G88458 NA other downstream 312813 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 1187469 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 1525142 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 2591778 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 1788973 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 2216269 7103571 ~ 7215239 (-)
G88779 NA other upstream 2230359 7117661 ~ 7118126 (-)
G88789 NA other upstream 2354409 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 4897321 9784623 ~ 9854099 (-)

Expression


Co-expression Network