cdk13 (cdk13,LOC107713640,LOC107566913)


Basic Information

Item Value
gene id cdk13
gene name cdk13,LOC107713640,LOC107566913
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5881559 ~ 5895535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238659.3
CTACTTCCTCGTTAGTGAGTAAGGGAGTCGGTGTTGAGGGCAAAAGCGCCCAGAAGTTTACCCCCTGGAGAGAGtaatacatgtttatttatctgttcaAGCTGGGCTGGATCTGACGAGGCTTCTGAAAAGTTTAACGCGAGCCTGGTTGAAGGAAAATCAGCGGGATCTTGGATGATGGCAGGCGGCTTGGTGGATACTCTCGTCGCGGTGTCCTGCTAAAGCTAGCGGTTGATAGCTAGCTatctttagctagctaactagcttggaTTAGAGGATGAACCGGCTCCAGGCTCCAGATTCTGTTAATTCAGTGGTTTAACTCCGATGAAGAGCTACTTTTGACGGATATTTATTTGTGGAGAGCCGGTGTGGGGTGCTGAGAGCGGCTGAAACGCGGCTAGAGTCTGGATAAAAAGCTAGACATTTTAACTAagatagctaagctaagctagtgtCGCCGCTGGGAGGCTCCTgatttgagctgctgctgctgcctgtagCTGGCAGCTAAGCTAacagctagctggctaactaactaaccccaTAGCTAGCTGCGTGTAGCCGCTGAAGTCCGCTTCCAATGTTCTGCTTTGTTTGTCGGGACCGTGGGGAACCGGGCTCTCAGCACACGTACAAGTACACGTACACGTCCACCACCCTCTTGTAAATGCCTAACCCGGAGATTTCTCACGACGGCCGGGGAGGCGGCAGGAGGCGCAGCAAAGCGGCGAGCACGACGGTGGCGGGCAGGACGGCGGCGAGCACGGCGGCTAACTCAAGCTCAAGCCAGCGGGAGCGGCACAGAGACAAGCAGCGCTCCGCGTCCTCCTCCCGCCGAAGAAAGAGGCACAAGCGCGGCAGGGATCGAGAGCAGTGGCTCGCTGCTGcagccgccgctgctgctgccggaCGGCGTGTGGAAAGCCTAGACGGCGAGCGCAGGGGGGTGATATTTGACGGTGAAGGGGATGAGCTACACGGGCTGGTGGAGTACGACGATGTGAGTTCGCAGTCTGAGCGCTTCTCTGGGAGTCCTTCACCCAGAGCCGAGCTCCAGGAGAGCAGCGTTAACTTCACCGGCGCTTCGCCGccagagagggacagagaggcGGGAAGGGAGACGGGGACTGCGCGGAGGTCACGGAGGGAAGCTGAGGTATCATCGCGGCAGGCGAAGCGGGACGACACCGGGGCTTCGTCCGAGAGGGGTAGTGCTAGGTCTGGAGATCGAGAGGGCAAGAGGAAAGAGCGGTCAAGCCGAGACAGGGACCGAGGCTTGATGAGGAACCACGACAGCAATGGAAGAAAGTCCTCAGCGGACAAGCGGGACTCCAAACGGCGCAAGAGCCGCAGCAGGTCGGACAAAAGTAAGAAGGAGCCGCCGTCCGCGTACAGAGAAACCCCGCAGGCCTACAGGGATGAGCGTGAGGAGTTGCGGGCCTATGGAGCTTCCTACACGTACGGAAGCGGCTACCAGTCCCCCACATACAACCAGCTCATATCGAGGAGAAGCCCCACGTATGGAACTAAAAGGCAGTCTCCCAATTCCACTTACTACAGCAGCCGTGACACGGAGCTCTACAGCGCCTACGGGGTGACCAAGTCGCCTAGCTCACACACGGCCGCTAAGAGGAAGCGCTCGCCGGCCAGCCCGTACGCCTGGCGCCGCTCCCCGAGCTATGGGCGCCCCAGCCCGGCCTACGAGCAGTGGGAGAATGCCTCCAGTCCATACGGGAGAAGAAGGTCAAGAAGTCCTTACCGAAAGAGTCTGAGTCCAAGTCCAGAGCTGAGGCGTCCAGGGAAATCGCGGAGCCGGAGCCCATACACGTCCACGCGCCACTCGCGCTCACGAAGCCGCCACCGCCACTCTCGCTCCCGCAGCCGACCCTCCAGCCTATCCCCCAGCACACTCACCTTCAAGAGCAGCCTGGCTGCTGAGCTTAGCAAGCAGAAGAGAGCCAAGGCTGCAGAGGCTGCTCGTGTCAAGAGCTCCAGCAACGCCTCCACACCTACCAAGggttcctcctcttcttccagCGCCCCCCAGCCTAGCCCTATCACCAACCATGCAGTCAAGAAGACACGGCCCCCATCCCCACCGCCAGTTTCTGAGAGAGGCCCCAGAACACCCACATCAAGCCAGCCGCAGTCCCCTGTTGAACGCCCTGCCAAGAGCAGCTCAGAAGCCCCACTGCCAGGCAAGGAGGTCAGgataaaagaggagaaaaggaaAAGCCAGTCCTCTCAagggaaggagaaagagagagggatcaCTCCAGTATCCTCACTGTCCTCCTTGCCTCTACCCCCTATTCTCCTAGAACACATCGATGGAGCTGATAGcttgaAGGAATCCTTATCAGCACACTCAGGGAAGAAGAAACCAGACAAGAAAACTCGCCACCTTCTCACCGACCTCCCGCTCCCACCTGAACTCCTGGGCAGTACTCTTGGGTCACCTCATAGCCCACCAGAAGAGAAAAAGACCCCCACTTTGCGCAGAAGACCCAAAATATGTGGGCCACGCTTTGGAGAGATTAAGGAGACTGAGATTGATTGGGGCAAGAGGTGTGTGGACAAGTTCGAAATCCTTGGGATCACTGGTGAAGGTACCTATGGACAAGTGTACAAAGCCAGGGATAAGGACACAGCTGAAATGGTGGCCCTGAAAAAGGTCAGATTAGACAATGAGAAAGAGGGCTTCCCCATTACGGCTATAAGGGAGATCAAGATCCTGAGGCAGCTCAACCACAAGAGCATCATTAATATGAAGGAGATTGTCACAGATAAGGAAGATGCCCTGGACTTCAAGAATGATAAAGGGGCATTTTACTTGGTGTTTGAGTACATGGACCATGACCTGATGGGACTTTTGGAATCTGGCCTGGTCCATTTTAACGAGAGTCACATCAAATCCTTCATGAGGCAGTTGCTGGAGGGCCTGGACTACTGCCACAAGAAGAACTTCCTGCACAGAGACATAAAATGCTCCAATATTTTGCTCAATAACAAGGGGCAAATAAAGCTGGCAGACTTTGGTTTGGCCAGACTCTACAACTCAGAGGAAAGCCGGCCTTATACCAATAAGGTGATCACACTGTGGTACCGTCCACCTGAGCTACTGCTTGGAGAAGAACGGTACACTCCTGCCATTGATGTTTGGAGCTGCGGGTGCATTCTCGGTGAACTCTTTACCAAGAAACCCATATTTCAGGCCAATCAGGAGCTGGCACAGTTGGAGCTGATCagtcGTATCTGTGGAAGTCCTTGTCCTGCTGTTTGGCCAGATGTGATAAAACTCCCATACTTTAACACCATGAAACCAAAGAAACAGTACAGACGCAGGCTACGTGAGGAGTTTGCTTTTATTCCTCCAACAGCGCTGGACCTGTTTGACCACATGCTGGCTCTGGACCCCAGCAAACGCTGTACGGCAGAACAAGCACTTAACAGTGACTTCCTGAGAGACGTGGATCCAGCCAAGATGCCCCCACCAGATCTCCCGCTTTGGCAGGACTGTCATGAGTTGTGGAGTAAGAAGCGTCGGAGGCAGAAGCAGATGCCAGAGGAGTTGGTTGTTCCAAAAGCTCCACGCAAAGAACTGGGGATGGACGACAGCCGCAGTAACACGCCTCAGGGCTTCTCTACTGCAGGAGTACACAAAGGCCCCAACgttgctgcagctgctgctgctctgctggACCCTAAAGGTCCAAACTCACAACTGACCCAGGAGCAGTTAGCCATGCTTCTGAACCTGCTTCAGTCCAAGAGTGCTCCACTTGGCTCTGCACAGCTCTCCCAGGCCATGGGTTTCAAGATGAACCCAGAAACTCTACAGCAGCTCACCAAGTCCCTTCTTCCTGGATCAGCTGAACCTGACAGACCCCCAGAACCTCTTGTACCTCCCCTTTCGCAGTCTAAGGCACCTAAACCACCCCAGCCTGGCCTGACAGTTGGTGGTGCCCCTCGAACCCCACCCATACCCAAACCTCCGTCACCCCCGACACCTCAGCAGCAGGGCAAGCCTGATGGAGAATCCTCGGCTGCAGTCACGCAAACTGCTGTCACAATGCTGCTTGCTCAGCTTCTCAACGTTCAGCAGAGCACAGACGTCATTGGGACTGAAGGACCAGATGGAGCCATTTCTGCAGTGGTTGGAGGGGCAGCTGCAGCCCCTCTACTGTCAACAGAGATTAAACAGCCCAGCCCAGCCTCACCAGTCACAGATGGGAGTGGGTCATCTTCTAGACCCCTGGAGCCTCTGTCCATTTTACCACCTGACCAGAGACCCCCAGAACCTCCAGAACCCCCTCCATGTTCAGATTTGGATTACAGACAAGCCCCTGACACAAAGCAAAGTATGTCCTCCTCCAAAGGAGGGGATGCACCACGACCCCCTGAGCCGGACTATCCTCCCCCACCTAGAGGTGCAGAAGGACCTGGATACAGGGCAGATTATAGCCGGCCTCCTCCACCTTCCTTTCCTCCTACAGGCTTTGGAGACAGCTACCTCAGCCACATGATGGGAGCAGGGATGCCTTCCCATGCCCTGAGGGAGGCTTTTAGCAGTAGTGCAAATGTGGCCGCCTCGGCTCCCGTCACCTCCGAGCCTTTCGCTCATGGAGGAGCACCAGGTGCCCGGAGTACTGGTGGGGGTTCGGGGGGAGGTAGTGGCAGTATGGTTTTTAGTGGAGACAAGGACCATCGCTTTGAGTACAATCACAGCCCTATACCTGTGGAGGGCACCTCCCATCCCACCAGCATACATCTCTACAACCCTGCTATTGGCCAAAAGGATGGAGGACCCCCGCCCCCTTCCATACCTCCACCCCCTCCAGGCCAGGCCTGGAGTTCACCCTCCCAGCAAGGAGCCCCACCTCTCCCACTTGGGTATGTCCCACATTTGAACACTGCAGCACTAAGAGGGAGGGGACTCCCTTACTGACCGATGTCCGAGCCTGGGAGGAATAACATGAGACTCAAGCCTCAGAAAAGGAAGACTCTAAAAGACGGAAGCAGTTGCTGTCCCTCAAGCCAGCACTGAGTGCACTACAGAGGCACACTTAGTTTGTAATAATTCTAACGATGGCTGCAGTAAGGGGCACTCCAGTAGACGAATGTGGCTTGAGTTACAACTGGAGGGATGAGTACAGAGGGggaaaattttatttttcctctcgtatatgttttatatcatcTACCCCTCTCTCTGATTTGGTAATCTATCCTACTGctgtcttttaaattaaaattttaccTTTTTTGAGTGTACATTTACCATCCACGGTAAGTGTTTTTATTCTCTGTACCTTAGTGTCTCCTTTAATTACATAAGGACAGACTAGTATTACAACGTTTTGCACTACTGACTTAAGTAGGCAGAAACAAAAGGTATGAAATGAATGGTGTGCTGTATCTGCACAAAATGGAATGACCagtaatgtagtttttttttcttatatatttttccccCAAATTATTAAACTTTGGTGGGCTCAGTCAGTTTTTCACTGGAGgggctttttaaaaaaggacTCCAGAGAGATTGGCAGCACTTGTGTGAATAGCCTTTTTTCAGAATCGGTATGTCTACTGAACAACTGAATGGAACAAAGCTGTATTTTCTCACCTGTTCCACCAGCCGTTGTCTATAGCCATTGTAAAATGAGACTAAAAGACACTTAATCCAATTTCAAAAAGGAGAGGAGCtgcaatgttttttgttttgttttttactaagatgttttttttccttttggcAAATGTTTATTAAAGAAATGCCAACAATGTA

Function

symbol description
cdk13 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity; cyclin binding activity; and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain; positive regulation of transcription elongation from RNA polymerase II promoter; and transcription elongation from RNA polymerase II promoter. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in congenital heart defects, dysmorphic facial features, and intellectual developmental disorder. Orthologous to human CDK13 (cyclin dependent kinase 13).

NR:

description
cyclin-dependent kinase 13-like

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08819 CDK12_13; cyclin-dependent kinase 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238659.3 True 5797 mRNA 0.53 14 5881559 5895535

Neighbor

gene id symbol gene type direction distance location
rmdn1 rmdn1,LOC107729932,LOC107668150,LOC107756855 coding downstream 994257 4879017 ~ 4887302 (-)
LOC103047438 ralyl,LOC108431401 coding downstream 1407464 4200272 ~ 4474095 (-)
f13a1 NA coding downstream 1834324 4023011 ~ 4047235 (-)
nrn1 nrn1,nrn1a,LOC107713755,LOC107734388 coding downstream 1871820 4000370 ~ 4009739 (-)
c10h18orf63 NA coding downstream 2310440 3537062 ~ 3571119 (-)
LOC103042957 ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841 coding upstream 5703 5901238 ~ 5910180 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding upstream 106784 6002319 ~ 6206469 (-)
impa2 impa2 coding upstream 316363 6211898 ~ 6225600 (-)
stk17a stk17a coding upstream 332070 6227605 ~ 6275310 (-)
LOC103045308 LOC108431216,LOC108271758 coding upstream 381581 6277116 ~ 6407022 (-)
G88574 NA non-coding downstream 349906 5531426 ~ 5531653 (-)
G88573 NA non-coding downstream 389191 5455286 ~ 5492368 (-)
G88561 NA non-coding downstream 840369 5034539 ~ 5041190 (-)
G88504 NA non-coding downstream 1073843 4807308 ~ 4807716 (-)
G88498 LOC103038427,LOC108431374,LOC106578530 non-coding downstream 1110464 4766319 ~ 4771095 (-)
G88613 NA non-coding upstream 32154 5927689 ~ 5928220 (-)
G88614 NA non-coding upstream 34476 5930011 ~ 5930511 (-)
G88617 LOC103043891,LOC108431261,LOC107734313 non-coding upstream 83553 5979088 ~ 5979726 (-)
G88618 NA non-coding upstream 90941 5986476 ~ 5987401 (-)
G88678 NA non-coding upstream 490459 6385994 ~ 6387918 (-)
G88465 NA other downstream 1286234 4595058 ~ 4595325 (-)
G88458 NA other downstream 1315355 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 2190011 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 2527684 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 3594320 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 780740 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 1208036 7103571 ~ 7215239 (-)
G88779 NA other upstream 1222126 7117661 ~ 7118126 (-)
G88789 NA other upstream 1346176 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 3889088 9784623 ~ 9854099 (-)

Expression


Co-expression Network