G88618


Basic Information

Item Value
gene id G88618
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5986476 ~ 5987401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119241
TCCACAGAAGCAATAATACTGATTAAATATGTGagaaatactgaatataaacgataatgaTTTGTAACACAGATCCGATTTTAGACTGTGATTGGGTAAAACCCATTTGCTAAGAGTCAGTATCAGACAGTAACAGCACTCTGAACCCTGATCTCTGTATCAGTACACCTCACTTGCTTGTAACCAAGCAAAAACCAAGTAGCAGCCAAGTTTACATGAGACACAACAAATAATTGCCGGTTCAAAACCCAGGTCATGGTGCTTGCCATCAGTAgctggagtcagagagagccTTATTGGAtatgctccctctgggtggtgAGATGGCACTCTATCCACACATcacttttaatataatgttgtttcagcacaggcatctgtctattagctgatgtatcagagctgagtTGCTGTGCTTTTCTTTAAGTACGCTGGCTTCCAAGTAATGCTACGTAAGTTGTAATTGGACAAGAGCCAGTAGCTGACTTCACAGTTATCGGAGGAGTCATGTGCTGGTGTTCTCTATCCTAATGTTAAGGGCATTATGAGGAATAGGGGGAGCCCTAGTGAGTGGATTGGGGAACTGTGTAACTGATATTTCAATACTGTGTATCTAAATCATGTATGAAAGTATTATGTTCAGGACTGGACAatgatttaaaatcaataattatgggaataaaaaataaaatttaataacggtgacatttttaaaatacatttaaatatacagtacattatttCTTAAGCCTTTTTCATAAGCTTTTAGATACAGACTATTGTCAggattaaaatttaatttaaatcatatggaccaaaatgaataaatatatattgtaaaataaatcttCTAGCCCtaattgtgatattttatttttattgcagatCACACACTTATCAAATTACACTAAATTCTCCTCCCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119241 True 926 lncRNA 0.36 1 5986476 5987401

Neighbor

gene id symbol gene type direction distance location
LOC103042957 ralaa,rala,LOC103042957,LOC107565693,LOC108268083,LOC101477841 coding downstream 76296 5901238 ~ 5910180 (-)
cdk13 cdk13,LOC107713640,LOC107566913 coding downstream 90941 5881559 ~ 5895535 (-)
rmdn1 rmdn1,LOC107729932,LOC107668150,LOC107756855 coding downstream 1099174 4879017 ~ 4887302 (-)
LOC103047438 ralyl,LOC108431401 coding downstream 1512381 4200272 ~ 4474095 (-)
f13a1 NA coding downstream 1939241 4023011 ~ 4047235 (-)
LOC103047759 LOC108431241,LOC108271803,LOC107655677 coding upstream 14918 6002319 ~ 6206469 (-)
impa2 impa2 coding upstream 224497 6211898 ~ 6225600 (-)
stk17a stk17a coding upstream 240204 6227605 ~ 6275310 (-)
LOC103045308 LOC108431216,LOC108271758 coding upstream 289715 6277116 ~ 6407022 (-)
LOC103026452 NA coding upstream 1111837 7099238 ~ 7101459 (-)
G88617 LOC103043891,LOC108431261,LOC107734313 non-coding downstream 6750 5979088 ~ 5979726 (-)
G88614 NA non-coding downstream 55965 5930011 ~ 5930511 (-)
G88613 NA non-coding downstream 58256 5927689 ~ 5928220 (-)
G88574 NA non-coding downstream 454823 5531426 ~ 5531653 (-)
G88573 NA non-coding downstream 494108 5455286 ~ 5492368 (-)
G88678 NA non-coding upstream 398593 6385994 ~ 6387918 (-)
G88686 NA non-coding upstream 468200 6455601 ~ 6456722 (-)
LOC111193291 NA non-coding upstream 469410 6456811 ~ 6457729 (-)
G88690 NA non-coding upstream 502608 6490009 ~ 6490275 (-)
G88706 NA non-coding upstream 672896 6660297 ~ 6660559 (-)
G88465 NA other downstream 1391151 4595058 ~ 4595325 (-)
G88458 NA other downstream 1420272 4565850 ~ 4566204 (-)
lyrm4 lyrm4 other downstream 2294928 3606430 ~ 3691548 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other downstream 2632601 3336557 ~ 3353875 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 3699237 2275608 ~ 2287239 (-)
vstm2a vstm2a other upstream 688874 6676275 ~ 6732664 (-)
LOC103026131 LOC108431006 other upstream 1116170 7103571 ~ 7215239 (-)
G88779 NA other upstream 1130260 7117661 ~ 7118126 (-)
G88789 NA other upstream 1254310 7241711 ~ 7242570 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other upstream 3797222 9784623 ~ 9854099 (-)

Expression


Co-expression Network